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### Running command:
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###   /home/rapidbuild/bbs-3.23-bioc-rapid/R/bin/Rscript -e "BiocCheck::BiocCheck('bamsignals_1.44.0.tar.gz','quit-with-status'=TRUE)"
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── Installing bamsignals ───────────────────────────────────────────────────────
✔ Package installed successfully
── bamsignals session metadata ─────────────────────────────────────────────────
→ sourceDir: /tmp/RtmptalMja/file152a24515310da/bamsignals
→ BiocVersion: 3.23
→ Package: bamsignals
→ PackageVersion: 1.44.0
→ BiocCheckDir: /media/volume/teran2_disk/rapidbuild/bbs-3.23-bioc-rapid/meat/bamsignals.BiocCheck
→ BiocCheckVersion: 1.48.0
→ sourceDir: /tmp/RtmptalMja/file152a24515310da/bamsignals
→ installDir: /tmp/RtmptalMja/file152a2433195afb
→ isTarBall: TRUE
→ platform: unix
── Running BiocCheck on bamsignals ─────────────────────────────────────────────
* Checking for deprecated package usage...
* Checking for remote package usage...
* Checking for 'LazyData: true' usage...
* Checking version number...
* Checking for version number mismatch...
* Checking version number validity...
* Checking R version dependency...
ℹ NOTE: Update R version dependency from 3.5.0 to 4.6.0
* Checking package size...
* Checking individual file sizes...
* Checking biocViews...
* Checking that biocViews are present...
* Checking package type based on biocViews...
→ Software
* Checking for non-trivial biocViews...
* Checking that biocViews come from the same category...
* Checking biocViews validity...
* Checking for recommended biocViews...
* Checking build system compatibility...
* Checking for proper Description: field...
* Checking if DESCRIPTION is well formatted...
* Checking for whitespace in DESCRIPTION field names...
* Checking that Package field matches directory/tarball name...
* Checking for Version: field...
ℹ NOTE: Consider adding the maintainer's ORCID iD in 'Authors@R' with
'comment=c(ORCID="...")'
* Checking License: for restrictive use...
* Checking for recommended DESCRIPTION fields...
* Checking for Bioconductor software dependencies...
ℹ Bioconductor dependencies found in Imports & Depends (60%).
* Checking for pinned package versions in DESCRIPTION...
* Checking for 'fnd' role in Authors@R...
ℹ NOTE: No 'fnd' role found in Authors@R. If the work is supported by a grant,
consider adding the 'fnd' role to the list of authors.
* Checking NAMESPACE...
* Checking .Rbuildignore...
* Checking for stray BiocCheck output folders...
* Checking vignette directory...
ℹ NOTE: Vignette(s) found with missing chunk labels
  Found in files:
    • bamsignals.Rmd
ℹ NOTE: 'sessionInfo' not found in vignette(s)
  Missing from file(s):
    • vignettes/bamsignals.Rmd
* Checking package installation calls in R code...
* Checking for library/require of bamsignals...
* Checking coding practice...
ℹ NOTE: Avoid 1:...; use seq_len() or seq_along()
  Found in files:
    • zzzCountSignals.R (line 118, column 34)
    • zzzCountSignals.R (line 130, column 15)
ℹ NOTE: Avoid 'cat' and 'print' outside of 'show' methods
  Found in files:
    • cat() in R/zzzCountSignals.R (line 124, column 5)
    • ...
    • cat() in R/zzzCountSignals.R (line 140, column 5)
! WARNING: .Deprecated / .Defunct usage (found 1 times)
  • .Deprecated() in R/zzz.R (line 5, column 5)
* Checking parsed R code in R directory, examples, vignettes...
* Checking function lengths...
* Checking man page documentation...
* Checking package NEWS...
* Checking unit tests...
* Checking skip_on_bioc() in tests...
* Checking formatting of DESCRIPTION, NAMESPACE, man pages, R source, and
vignette source...
ℹ NOTE: Consider shorter lines; 18 lines (2%) are > 80 characters long.
  First few lines:
    • R/RcppExports.R#L12 pileup_core <- function(bampath, gr, tle ...
    • ...
    • vignettes/bamsignals.Rmd#L350 covSigs.monoNucl <- bamCoverage(bampath,
    ...
ℹ NOTE: Consider multiples of 4 spaces for line indents; 35 lines (5%) are not.
  First few lines:
    • R/wrappers.R#L77 #considers only the first read in a pr ...
    • ...
    • vignettes/bamsignals.Rmd#L360 lty=c(1,3)) ...
ℹ See https://contributions.bioconductor.org/r-code.html
ℹ See styler package: https://cran.r-project.org/package=styler as described in
the BiocCheck vignette.
* Checking if package already exists in CRAN...
* Checking for bioc-devel mailing list subscription...
ℹ NOTE: Cannot determine whether maintainer is subscribed to the Bioc-Devel
mailing list (requires admin credentials). Subscribe here:
https://stat.ethz.ch/mailman/listinfo/bioc-devel
* Checking for support site registration...
✖ ERROR: Unable to find your email in the Support Site: HTTP 404 Not Found.
── BiocCheck v1.48.0 results ───────────────────────────────────────────────────
✖ 1 ERRORS | ⚠ 1 WARNINGS | ℹ 10 NOTES
ℹ See the bamsignals.BiocCheck folder and run
  browseVignettes(package = 'BiocCheck')
  for details.