Multiple platform build/check report for BioC 3.23 - BUILD results for COMPASS on kjohnson3

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 24.04.4 LTS)	x86_64	4.6.0 RC (2026-04-17 r89917) -- "Because it was There"	4988
kjohnson3	macOS 13.7.7 Ventura	arm64	4.6.0 Patched (2026-04-24 r89963) -- "Because it was There"	4718
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*
BUILD results for COMPASS on kjohnson3

To the developers/maintainers of the COMPASS package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/COMPASS.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.
raw results
Summary

Package: COMPASS
Version: 1.50.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data COMPASS
StartedAt: 2026-05-01 16:03:34 -0400 (Fri, 01 May 2026)
EndedAt: 2026-05-01 16:03:36 -0400 (Fri, 01 May 2026)
EllapsedTime: 2.0 seconds
RetCode: 1
Status: ERROR
PackageFile: None
PackageFileSize: NA
Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data COMPASS
###
##############################################################################
##############################################################################


* checking for file ‘COMPASS/DESCRIPTION’ ... OK
* preparing ‘COMPASS’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* running ‘cleanup’
* installing the package (it is needed to build vignettes)
      -----------------------------------
* installing *source* package ‘COMPASS’ ...
** this is package ‘COMPASS’ version ‘1.50.0’
** using staged installation
** libs
using C compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’
using C++ compiler: ‘Apple clang version 17.0.0 (clang-1700.6.4.2)’
using SDK: ‘MacOSX26.2.sdk’
clang -arch arm64 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.6/Resources/library/Rcpp/include' -I/opt/R/arm64/include    -fPIC  -falign-functions=64 -Wall -g -O2  -c COMPASS_c.c -o COMPASS_c.o
COMPASS_c.c:76:7: error: call to undeclared function 'DATAPTR'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
   76 |       HANDLE_CASE_MEMCPY(INTEGER, int);
      |       ^
COMPASS_c.c:69:18: note: expanded from macro 'HANDLE_CASE_MEMCPY'
   69 |           (char*)DATAPTR(elt), (char*)DATAPTR(x) + (i* nRow* sz), nRow* sz); \
      |                  ^
COMPASS_c.c:76:7: warning: cast to 'char *' from smaller integer type 'int' [-Wint-to-pointer-cast]
   76 |       HANDLE_CASE_MEMCPY(INTEGER, int);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
COMPASS_c.c:69:11: note: expanded from macro 'HANDLE_CASE_MEMCPY'
   68 |       memcpy(                                                                \
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   69 |           (char*)DATAPTR(elt), (char*)DATAPTR(x) + (i* nRow* sz), nRow* sz); \
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:234:40: note: expanded from macro 'memcpy'
  234 | #define memcpy(...) __memcpy_chk_func (__VA_ARGS__)
      |                     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:127:27: note: expanded from macro '__memcpy_chk_func'
  127 |                 __builtin___memcpy_chk (dest, __VA_ARGS__, __darwin_obsz0 (dest))
      |                                         ^~~~
COMPASS_c.c:76:7: warning: cast to 'char *' from smaller integer type 'int' [-Wint-to-pointer-cast]
   76 |       HANDLE_CASE_MEMCPY(INTEGER, int);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
COMPASS_c.c:69:32: note: expanded from macro 'HANDLE_CASE_MEMCPY'
   69 |           (char*)DATAPTR(elt), (char*)DATAPTR(x) + (i* nRow* sz), nRow* sz); \
      |                                ^~~~~~~~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:234:40: note: expanded from macro 'memcpy'
  234 | #define memcpy(...) __memcpy_chk_func (__VA_ARGS__)
      |                                        ^~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:127:33: note: expanded from macro '__memcpy_chk_func'
  127 |                 __builtin___memcpy_chk (dest, __VA_ARGS__, __darwin_obsz0 (dest))
      |                                               ^~~~~~~~~~~
COMPASS_c.c:76:7: warning: cast to 'char *' from smaller integer type 'int' [-Wint-to-pointer-cast]
   76 |       HANDLE_CASE_MEMCPY(INTEGER, int);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
COMPASS_c.c:69:11: note: expanded from macro 'HANDLE_CASE_MEMCPY'
   68 |       memcpy(                                                                \
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   69 |           (char*)DATAPTR(elt), (char*)DATAPTR(x) + (i* nRow* sz), nRow* sz); \
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:234:40: note: expanded from macro 'memcpy'
  234 | #define memcpy(...) __memcpy_chk_func (__VA_ARGS__)
      |                     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:127:62: note: expanded from macro '__memcpy_chk_func'
  127 |                 __builtin___memcpy_chk (dest, __VA_ARGS__, __darwin_obsz0 (dest))
      |                                                            ~~~~~~~~~~~~~~~~^~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_common.h:40:55: note: expanded from macro '__darwin_obsz0'
   40 | #define __darwin_obsz0(object) __builtin_object_size (object, 0)
      |                                                       ^~~~~~
COMPASS_c.c:78:7: error: call to undeclared function 'DATAPTR'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
   78 |       HANDLE_CASE_MEMCPY(REAL, double);
      |       ^
COMPASS_c.c:69:18: note: expanded from macro 'HANDLE_CASE_MEMCPY'
   69 |           (char*)DATAPTR(elt), (char*)DATAPTR(x) + (i* nRow* sz), nRow* sz); \
      |                  ^
COMPASS_c.c:78:7: warning: cast to 'char *' from smaller integer type 'int' [-Wint-to-pointer-cast]
   78 |       HANDLE_CASE_MEMCPY(REAL, double);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
COMPASS_c.c:69:11: note: expanded from macro 'HANDLE_CASE_MEMCPY'
   68 |       memcpy(                                                                \
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   69 |           (char*)DATAPTR(elt), (char*)DATAPTR(x) + (i* nRow* sz), nRow* sz); \
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:234:40: note: expanded from macro 'memcpy'
  234 | #define memcpy(...) __memcpy_chk_func (__VA_ARGS__)
      |                     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:127:27: note: expanded from macro '__memcpy_chk_func'
  127 |                 __builtin___memcpy_chk (dest, __VA_ARGS__, __darwin_obsz0 (dest))
      |                                         ^~~~
COMPASS_c.c:78:7: warning: cast to 'char *' from smaller integer type 'int' [-Wint-to-pointer-cast]
   78 |       HANDLE_CASE_MEMCPY(REAL, double);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
COMPASS_c.c:69:32: note: expanded from macro 'HANDLE_CASE_MEMCPY'
   69 |           (char*)DATAPTR(elt), (char*)DATAPTR(x) + (i* nRow* sz), nRow* sz); \
      |                                ^~~~~~~~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:234:40: note: expanded from macro 'memcpy'
  234 | #define memcpy(...) __memcpy_chk_func (__VA_ARGS__)
      |                                        ^~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:127:33: note: expanded from macro '__memcpy_chk_func'
  127 |                 __builtin___memcpy_chk (dest, __VA_ARGS__, __darwin_obsz0 (dest))
      |                                               ^~~~~~~~~~~
COMPASS_c.c:78:7: warning: cast to 'char *' from smaller integer type 'int' [-Wint-to-pointer-cast]
   78 |       HANDLE_CASE_MEMCPY(REAL, double);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
COMPASS_c.c:69:11: note: expanded from macro 'HANDLE_CASE_MEMCPY'
   68 |       memcpy(                                                                \
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   69 |           (char*)DATAPTR(elt), (char*)DATAPTR(x) + (i* nRow* sz), nRow* sz); \
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:234:40: note: expanded from macro 'memcpy'
  234 | #define memcpy(...) __memcpy_chk_func (__VA_ARGS__)
      |                     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:127:62: note: expanded from macro '__memcpy_chk_func'
  127 |                 __builtin___memcpy_chk (dest, __VA_ARGS__, __darwin_obsz0 (dest))
      |                                                            ~~~~~~~~~~~~~~~~^~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_common.h:40:55: note: expanded from macro '__darwin_obsz0'
   40 | #define __darwin_obsz0(object) __builtin_object_size (object, 0)
      |                                                       ^~~~~~
COMPASS_c.c:80:7: error: call to undeclared function 'DATAPTR'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
   80 |       HANDLE_CASE_MEMCPY(INTEGER, int);
      |       ^
COMPASS_c.c:69:18: note: expanded from macro 'HANDLE_CASE_MEMCPY'
   69 |           (char*)DATAPTR(elt), (char*)DATAPTR(x) + (i* nRow* sz), nRow* sz); \
      |                  ^
COMPASS_c.c:80:7: warning: cast to 'char *' from smaller integer type 'int' [-Wint-to-pointer-cast]
   80 |       HANDLE_CASE_MEMCPY(INTEGER, int);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
COMPASS_c.c:69:11: note: expanded from macro 'HANDLE_CASE_MEMCPY'
   68 |       memcpy(                                                                \
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   69 |           (char*)DATAPTR(elt), (char*)DATAPTR(x) + (i* nRow* sz), nRow* sz); \
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:234:40: note: expanded from macro 'memcpy'
  234 | #define memcpy(...) __memcpy_chk_func (__VA_ARGS__)
      |                     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:127:27: note: expanded from macro '__memcpy_chk_func'
  127 |                 __builtin___memcpy_chk (dest, __VA_ARGS__, __darwin_obsz0 (dest))
      |                                         ^~~~
COMPASS_c.c:80:7: warning: cast to 'char *' from smaller integer type 'int' [-Wint-to-pointer-cast]
   80 |       HANDLE_CASE_MEMCPY(INTEGER, int);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
COMPASS_c.c:69:32: note: expanded from macro 'HANDLE_CASE_MEMCPY'
   69 |           (char*)DATAPTR(elt), (char*)DATAPTR(x) + (i* nRow* sz), nRow* sz); \
      |                                ^~~~~~~~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:234:40: note: expanded from macro 'memcpy'
  234 | #define memcpy(...) __memcpy_chk_func (__VA_ARGS__)
      |                                        ^~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:127:33: note: expanded from macro '__memcpy_chk_func'
  127 |                 __builtin___memcpy_chk (dest, __VA_ARGS__, __darwin_obsz0 (dest))
      |                                               ^~~~~~~~~~~
COMPASS_c.c:80:7: warning: cast to 'char *' from smaller integer type 'int' [-Wint-to-pointer-cast]
   80 |       HANDLE_CASE_MEMCPY(INTEGER, int);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
COMPASS_c.c:69:11: note: expanded from macro 'HANDLE_CASE_MEMCPY'
   68 |       memcpy(                                                                \
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   69 |           (char*)DATAPTR(elt), (char*)DATAPTR(x) + (i* nRow* sz), nRow* sz); \
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:234:40: note: expanded from macro 'memcpy'
  234 | #define memcpy(...) __memcpy_chk_func (__VA_ARGS__)
      |                     ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:127:62: note: expanded from macro '__memcpy_chk_func'
  127 |                 __builtin___memcpy_chk (dest, __VA_ARGS__, __darwin_obsz0 (dest))
      |                                                            ~~~~~~~~~~~~~~~~^~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_common.h:40:55: note: expanded from macro '__darwin_obsz0'
   40 | #define __darwin_obsz0(object) __builtin_object_size (object, 0)
      |                                                       ^~~~~~
COMPASS_c.c:82:19: error: call to undeclared function 'STRING_PTR'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
   82 |       HANDLE_CASE(STRING_PTR, SEXP);
      |                   ^
COMPASS_c.c:82:7: error: incompatible integer to pointer conversion initializing 'SEXP *' (aka 'struct SEXPREC **') with an expression of type 'int' [-Wint-conversion]
   82 |       HANDLE_CASE(STRING_PTR, SEXP);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
COMPASS_c.c:53:14: note: expanded from macro 'HANDLE_CASE'
   53 |       CTYPE* output_ptr = ACCESSOR(VECTOR_ELT(output, i)); \
      |              ^            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
COMPASS_c.c:82:7: error: incompatible integer to pointer conversion initializing 'SEXP *' (aka 'struct SEXPREC **') with an expression of type 'int' [-Wint-conversion]
   82 |       HANDLE_CASE(STRING_PTR, SEXP);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
COMPASS_c.c:54:14: note: expanded from macro 'HANDLE_CASE'
   54 |       CTYPE* x_ptr = ACCESSOR(x);                          \
      |              ^       ~~~~~~~~~~~
COMPASS_c.c:118:15: error: call to undeclared function 'STRING_PTR'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
  118 |   SEXP* ptr = STRING_PTR(x);
      |               ^
COMPASS_c.c:118:9: error: incompatible integer to pointer conversion initializing 'SEXP *' (aka 'struct SEXPREC **') with an expression of type 'int' [-Wint-conversion]
  118 |   SEXP* ptr = STRING_PTR(x);
      |         ^     ~~~~~~~~~~~~~
COMPASS_c.c:119:9: error: incompatible integer to pointer conversion initializing 'SEXP *' (aka 'struct SEXPREC **') with an expression of type 'int' [-Wint-conversion]
  119 |   SEXP* out_ptr = STRING_PTR(out);
      |         ^         ~~~~~~~~~~~~~~~
COMPASS_c.c:165:5: error: call to undeclared function 'DATAPTR'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
  165 |     HANDLE_CASE(INTSXP, int);
      |     ^
COMPASS_c.c:155:21: note: expanded from macro 'HANDLE_CASE'
  155 |       memcpy((char*)DATAPTR(out) + (i* len* sz), (char*)DATAPTR(x), len* sz); \
      |                     ^
COMPASS_c.c:165:5: warning: cast to 'char *' from smaller integer type 'int' [-Wint-to-pointer-cast]
  165 |     HANDLE_CASE(INTSXP, int);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~
COMPASS_c.c:155:14: note: expanded from macro 'HANDLE_CASE'
  155 |       memcpy((char*)DATAPTR(out) + (i* len* sz), (char*)DATAPTR(x), len* sz); \
      |              ^~~~~~~~~~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:234:40: note: expanded from macro 'memcpy'
  234 | #define memcpy(...) __memcpy_chk_func (__VA_ARGS__)
      |                                        ^~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:127:27: note: expanded from macro '__memcpy_chk_func'
  127 |                 __builtin___memcpy_chk (dest, __VA_ARGS__, __darwin_obsz0 (dest))
      |                                         ^~~~
COMPASS_c.c:165:5: warning: cast to 'char *' from smaller integer type 'int' [-Wint-to-pointer-cast]
  165 |     HANDLE_CASE(INTSXP, int);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~
COMPASS_c.c:155:50: note: expanded from macro 'HANDLE_CASE'
  155 |       memcpy((char*)DATAPTR(out) + (i* len* sz), (char*)DATAPTR(x), len* sz); \
      |                                                  ^~~~~~~~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:234:40: note: expanded from macro 'memcpy'
  234 | #define memcpy(...) __memcpy_chk_func (__VA_ARGS__)
      |                                        ^~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:127:33: note: expanded from macro '__memcpy_chk_func'
  127 |                 __builtin___memcpy_chk (dest, __VA_ARGS__, __darwin_obsz0 (dest))
      |                                               ^~~~~~~~~~~
COMPASS_c.c:165:5: warning: cast to 'char *' from smaller integer type 'int' [-Wint-to-pointer-cast]
  165 |     HANDLE_CASE(INTSXP, int);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~
COMPASS_c.c:155:14: note: expanded from macro 'HANDLE_CASE'
  155 |       memcpy((char*)DATAPTR(out) + (i* len* sz), (char*)DATAPTR(x), len* sz); \
      |              ^~~~~~~~~~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:234:40: note: expanded from macro 'memcpy'
  234 | #define memcpy(...) __memcpy_chk_func (__VA_ARGS__)
      |                                        ^~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:127:62: note: expanded from macro '__memcpy_chk_func'
  127 |                 __builtin___memcpy_chk (dest, __VA_ARGS__, __darwin_obsz0 (dest))
      |                                                                            ^~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_common.h:40:55: note: expanded from macro '__darwin_obsz0'
   40 | #define __darwin_obsz0(object) __builtin_object_size (object, 0)
      |                                                       ^~~~~~
COMPASS_c.c:166:5: error: call to undeclared function 'DATAPTR'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
  166 |     HANDLE_CASE(REALSXP, double);
      |     ^
COMPASS_c.c:155:21: note: expanded from macro 'HANDLE_CASE'
  155 |       memcpy((char*)DATAPTR(out) + (i* len* sz), (char*)DATAPTR(x), len* sz); \
      |                     ^
COMPASS_c.c:166:5: warning: cast to 'char *' from smaller integer type 'int' [-Wint-to-pointer-cast]
  166 |     HANDLE_CASE(REALSXP, double);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
COMPASS_c.c:155:14: note: expanded from macro 'HANDLE_CASE'
  155 |       memcpy((char*)DATAPTR(out) + (i* len* sz), (char*)DATAPTR(x), len* sz); \
      |              ^~~~~~~~~~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:234:40: note: expanded from macro 'memcpy'
  234 | #define memcpy(...) __memcpy_chk_func (__VA_ARGS__)
      |                                        ^~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:127:27: note: expanded from macro '__memcpy_chk_func'
  127 |                 __builtin___memcpy_chk (dest, __VA_ARGS__, __darwin_obsz0 (dest))
      |                                         ^~~~
COMPASS_c.c:166:5: warning: cast to 'char *' from smaller integer type 'int' [-Wint-to-pointer-cast]
  166 |     HANDLE_CASE(REALSXP, double);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
COMPASS_c.c:155:50: note: expanded from macro 'HANDLE_CASE'
  155 |       memcpy((char*)DATAPTR(out) + (i* len* sz), (char*)DATAPTR(x), len* sz); \
      |                                                  ^~~~~~~~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:234:40: note: expanded from macro 'memcpy'
  234 | #define memcpy(...) __memcpy_chk_func (__VA_ARGS__)
      |                                        ^~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:127:33: note: expanded from macro '__memcpy_chk_func'
  127 |                 __builtin___memcpy_chk (dest, __VA_ARGS__, __darwin_obsz0 (dest))
      |                                               ^~~~~~~~~~~
COMPASS_c.c:166:5: warning: cast to 'char *' from smaller integer type 'int' [-Wint-to-pointer-cast]
  166 |     HANDLE_CASE(REALSXP, double);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
COMPASS_c.c:155:14: note: expanded from macro 'HANDLE_CASE'
  155 |       memcpy((char*)DATAPTR(out) + (i* len* sz), (char*)DATAPTR(x), len* sz); \
      |              ^~~~~~~~~~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:234:40: note: expanded from macro 'memcpy'
  234 | #define memcpy(...) __memcpy_chk_func (__VA_ARGS__)
      |                                        ^~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:127:62: note: expanded from macro '__memcpy_chk_func'
  127 |                 __builtin___memcpy_chk (dest, __VA_ARGS__, __darwin_obsz0 (dest))
      |                                                                            ^~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_common.h:40:55: note: expanded from macro '__darwin_obsz0'
   40 | #define __darwin_obsz0(object) __builtin_object_size (object, 0)
      |                                                       ^~~~~~
COMPASS_c.c:167:5: error: call to undeclared function 'DATAPTR'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
  167 |     HANDLE_CASE(LGLSXP, int);
      |     ^
COMPASS_c.c:155:21: note: expanded from macro 'HANDLE_CASE'
  155 |       memcpy((char*)DATAPTR(out) + (i* len* sz), (char*)DATAPTR(x), len* sz); \
      |                     ^
COMPASS_c.c:167:5: warning: cast to 'char *' from smaller integer type 'int' [-Wint-to-pointer-cast]
  167 |     HANDLE_CASE(LGLSXP, int);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~
COMPASS_c.c:155:14: note: expanded from macro 'HANDLE_CASE'
  155 |       memcpy((char*)DATAPTR(out) + (i* len* sz), (char*)DATAPTR(x), len* sz); \
      |              ^~~~~~~~~~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:234:40: note: expanded from macro 'memcpy'
  234 | #define memcpy(...) __memcpy_chk_func (__VA_ARGS__)
      |                                        ^~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:127:27: note: expanded from macro '__memcpy_chk_func'
  127 |                 __builtin___memcpy_chk (dest, __VA_ARGS__, __darwin_obsz0 (dest))
      |                                         ^~~~
COMPASS_c.c:167:5: warning: cast to 'char *' from smaller integer type 'int' [-Wint-to-pointer-cast]
  167 |     HANDLE_CASE(LGLSXP, int);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~
COMPASS_c.c:155:50: note: expanded from macro 'HANDLE_CASE'
  155 |       memcpy((char*)DATAPTR(out) + (i* len* sz), (char*)DATAPTR(x), len* sz); \
      |                                                  ^~~~~~~~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:234:40: note: expanded from macro 'memcpy'
  234 | #define memcpy(...) __memcpy_chk_func (__VA_ARGS__)
      |                                        ^~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:127:33: note: expanded from macro '__memcpy_chk_func'
  127 |                 __builtin___memcpy_chk (dest, __VA_ARGS__, __darwin_obsz0 (dest))
      |                                               ^~~~~~~~~~~
COMPASS_c.c:167:5: warning: cast to 'char *' from smaller integer type 'int' [-Wint-to-pointer-cast]
  167 |     HANDLE_CASE(LGLSXP, int);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~
COMPASS_c.c:155:14: note: expanded from macro 'HANDLE_CASE'
  155 |       memcpy((char*)DATAPTR(out) + (i* len* sz), (char*)DATAPTR(x), len* sz); \
      |              ^~~~~~~~~~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:234:40: note: expanded from macro 'memcpy'
  234 | #define memcpy(...) __memcpy_chk_func (__VA_ARGS__)
      |                                        ^~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:127:62: note: expanded from macro '__memcpy_chk_func'
  127 |                 __builtin___memcpy_chk (dest, __VA_ARGS__, __darwin_obsz0 (dest))
      |                                                                            ^~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_common.h:40:55: note: expanded from macro '__darwin_obsz0'
   40 | #define __darwin_obsz0(object) __builtin_object_size (object, 0)
      |                                                       ^~~~~~
COMPASS_c.c:168:5: error: call to undeclared function 'STRING_PTR'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
  168 |     HANDLE_CASE_STRING;
      |     ^
COMPASS_c.c:138:17: note: expanded from macro 'HANDLE_CASE_STRING'
  138 |     SEXP* ptr = STRING_PTR(x);                       \
      |                 ^
COMPASS_c.c:168:5: error: incompatible integer to pointer conversion initializing 'SEXP *' (aka 'struct SEXPREC **') with an expression of type 'int' [-Wint-conversion]
  168 |     HANDLE_CASE_STRING;
      |     ^~~~~~~~~~~~~~~~~~
COMPASS_c.c:138:11: note: expanded from macro 'HANDLE_CASE_STRING'
  138 |     SEXP* ptr = STRING_PTR(x);                       \
      |           ^     ~~~~~~~~~~~~~
COMPASS_c.c:168:5: error: incompatible integer to pointer conversion initializing 'SEXP *' (aka 'struct SEXPREC **') with an expression of type 'int' [-Wint-conversion]
  168 |     HANDLE_CASE_STRING;
      |     ^~~~~~~~~~~~~~~~~~
COMPASS_c.c:139:11: note: expanded from macro 'HANDLE_CASE_STRING'
  139 |     SEXP* out_ptr = STRING_PTR(out);                 \
      |           ^         ~~~~~~~~~~~~~~~
COMPASS_c.c:258:5: error: call to undeclared function 'DATAPTR'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
  258 |     HANDLE_CASE(INTSXP, int);
      |     ^
COMPASS_c.c:245:21: note: expanded from macro 'HANDLE_CASE'
  245 |       memcpy((char*)DATAPTR(value_SEXP) + (i* nRow * sizeof(CTYPE)), \
      |                     ^
COMPASS_c.c:258:5: warning: cast to 'char *' from smaller integer type 'int' [-Wint-to-pointer-cast]
  258 |     HANDLE_CASE(INTSXP, int);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~
COMPASS_c.c:245:14: note: expanded from macro 'HANDLE_CASE'
  245 |       memcpy((char*)DATAPTR(value_SEXP) + (i* nRow * sizeof(CTYPE)), \
      |              ^~~~~~~~~~~~~~~~~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:234:40: note: expanded from macro 'memcpy'
  234 | #define memcpy(...) __memcpy_chk_func (__VA_ARGS__)
      |                                        ^~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:127:27: note: expanded from macro '__memcpy_chk_func'
  127 |                 __builtin___memcpy_chk (dest, __VA_ARGS__, __darwin_obsz0 (dest))
      |                                         ^~~~
COMPASS_c.c:258:5: warning: cast to 'char *' from smaller integer type 'int' [-Wint-to-pointer-cast]
  258 |     HANDLE_CASE(INTSXP, int);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~
COMPASS_c.c:246:14: note: expanded from macro 'HANDLE_CASE'
  246 |              (char*)DATAPTR(tmp),                                    \
      |              ^~~~~~~~~~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:234:40: note: expanded from macro 'memcpy'
  234 | #define memcpy(...) __memcpy_chk_func (__VA_ARGS__)
      |                                        ^~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:127:33: note: expanded from macro '__memcpy_chk_func'
  127 |                 __builtin___memcpy_chk (dest, __VA_ARGS__, __darwin_obsz0 (dest))
      |                                               ^~~~~~~~~~~
COMPASS_c.c:258:5: warning: cast to 'char *' from smaller integer type 'int' [-Wint-to-pointer-cast]
  258 |     HANDLE_CASE(INTSXP, int);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~
COMPASS_c.c:245:14: note: expanded from macro 'HANDLE_CASE'
  245 |       memcpy((char*)DATAPTR(value_SEXP) + (i* nRow * sizeof(CTYPE)), \
      |              ^~~~~~~~~~~~~~~~~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:234:40: note: expanded from macro 'memcpy'
  234 | #define memcpy(...) __memcpy_chk_func (__VA_ARGS__)
      |                                        ^~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:127:62: note: expanded from macro '__memcpy_chk_func'
  127 |                 __builtin___memcpy_chk (dest, __VA_ARGS__, __darwin_obsz0 (dest))
      |                                                                            ^~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_common.h:40:55: note: expanded from macro '__darwin_obsz0'
   40 | #define __darwin_obsz0(object) __builtin_object_size (object, 0)
      |                                                       ^~~~~~
COMPASS_c.c:259:5: error: call to undeclared function 'DATAPTR'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
  259 |     HANDLE_CASE(REALSXP, double);
      |     ^
COMPASS_c.c:245:21: note: expanded from macro 'HANDLE_CASE'
  245 |       memcpy((char*)DATAPTR(value_SEXP) + (i* nRow * sizeof(CTYPE)), \
      |                     ^
COMPASS_c.c:259:5: warning: cast to 'char *' from smaller integer type 'int' [-Wint-to-pointer-cast]
  259 |     HANDLE_CASE(REALSXP, double);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
COMPASS_c.c:245:14: note: expanded from macro 'HANDLE_CASE'
  245 |       memcpy((char*)DATAPTR(value_SEXP) + (i* nRow * sizeof(CTYPE)), \
      |              ^~~~~~~~~~~~~~~~~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:234:40: note: expanded from macro 'memcpy'
  234 | #define memcpy(...) __memcpy_chk_func (__VA_ARGS__)
      |                                        ^~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:127:27: note: expanded from macro '__memcpy_chk_func'
  127 |                 __builtin___memcpy_chk (dest, __VA_ARGS__, __darwin_obsz0 (dest))
      |                                         ^~~~
COMPASS_c.c:259:5: warning: cast to 'char *' from smaller integer type 'int' [-Wint-to-pointer-cast]
  259 |     HANDLE_CASE(REALSXP, double);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
COMPASS_c.c:246:14: note: expanded from macro 'HANDLE_CASE'
  246 |              (char*)DATAPTR(tmp),                                    \
      |              ^~~~~~~~~~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:234:40: note: expanded from macro 'memcpy'
  234 | #define memcpy(...) __memcpy_chk_func (__VA_ARGS__)
      |                                        ^~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:127:33: note: expanded from macro '__memcpy_chk_func'
  127 |                 __builtin___memcpy_chk (dest, __VA_ARGS__, __darwin_obsz0 (dest))
      |                                               ^~~~~~~~~~~
COMPASS_c.c:259:5: warning: cast to 'char *' from smaller integer type 'int' [-Wint-to-pointer-cast]
  259 |     HANDLE_CASE(REALSXP, double);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
COMPASS_c.c:245:14: note: expanded from macro 'HANDLE_CASE'
  245 |       memcpy((char*)DATAPTR(value_SEXP) + (i* nRow * sizeof(CTYPE)), \
      |              ^~~~~~~~~~~~~~~~~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:234:40: note: expanded from macro 'memcpy'
  234 | #define memcpy(...) __memcpy_chk_func (__VA_ARGS__)
      |                                        ^~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:127:62: note: expanded from macro '__memcpy_chk_func'
  127 |                 __builtin___memcpy_chk (dest, __VA_ARGS__, __darwin_obsz0 (dest))
      |                                                                            ^~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_common.h:40:55: note: expanded from macro '__darwin_obsz0'
   40 | #define __darwin_obsz0(object) __builtin_object_size (object, 0)
      |                                                       ^~~~~~
COMPASS_c.c:260:5: error: call to undeclared function 'DATAPTR'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
  260 |     HANDLE_CASE(LGLSXP, int);
      |     ^
COMPASS_c.c:245:21: note: expanded from macro 'HANDLE_CASE'
  245 |       memcpy((char*)DATAPTR(value_SEXP) + (i* nRow * sizeof(CTYPE)), \
      |                     ^
COMPASS_c.c:260:5: warning: cast to 'char *' from smaller integer type 'int' [-Wint-to-pointer-cast]
  260 |     HANDLE_CASE(LGLSXP, int);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~
COMPASS_c.c:245:14: note: expanded from macro 'HANDLE_CASE'
  245 |       memcpy((char*)DATAPTR(value_SEXP) + (i* nRow * sizeof(CTYPE)), \
      |              ^~~~~~~~~~~~~~~~~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:234:40: note: expanded from macro 'memcpy'
  234 | #define memcpy(...) __memcpy_chk_func (__VA_ARGS__)
      |                                        ^~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:127:27: note: expanded from macro '__memcpy_chk_func'
  127 |                 __builtin___memcpy_chk (dest, __VA_ARGS__, __darwin_obsz0 (dest))
      |                                         ^~~~
COMPASS_c.c:260:5: warning: cast to 'char *' from smaller integer type 'int' [-Wint-to-pointer-cast]
  260 |     HANDLE_CASE(LGLSXP, int);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~
COMPASS_c.c:246:14: note: expanded from macro 'HANDLE_CASE'
  246 |              (char*)DATAPTR(tmp),                                    \
      |              ^~~~~~~~~~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:234:40: note: expanded from macro 'memcpy'
  234 | #define memcpy(...) __memcpy_chk_func (__VA_ARGS__)
      |                                        ^~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:127:33: note: expanded from macro '__memcpy_chk_func'
  127 |                 __builtin___memcpy_chk (dest, __VA_ARGS__, __darwin_obsz0 (dest))
      |                                               ^~~~~~~~~~~
COMPASS_c.c:260:5: warning: cast to 'char *' from smaller integer type 'int' [-Wint-to-pointer-cast]
  260 |     HANDLE_CASE(LGLSXP, int);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~
COMPASS_c.c:245:14: note: expanded from macro 'HANDLE_CASE'
  245 |       memcpy((char*)DATAPTR(value_SEXP) + (i* nRow * sizeof(CTYPE)), \
      |              ^~~~~~~~~~~~~~~~~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:234:40: note: expanded from macro 'memcpy'
  234 | #define memcpy(...) __memcpy_chk_func (__VA_ARGS__)
      |                                        ^~~~~~~~~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_string.h:127:62: note: expanded from macro '__memcpy_chk_func'
  127 |                 __builtin___memcpy_chk (dest, __VA_ARGS__, __darwin_obsz0 (dest))
      |                                                                            ^~~~
/Library/Developer/CommandLineTools/SDKs/MacOSX26.sdk/usr/include/secure/_common.h:40:55: note: expanded from macro '__darwin_obsz0'
   40 | #define __darwin_obsz0(object) __builtin_object_size (object, 0)
      |                                                       ^~~~~~
COMPASS_c.c:274:30: error: call to undeclared function 'STRING_PTR'; ISO C99 and later do not support implicit function declarations [-Wimplicit-function-declaration]
  274 |           curr_str_vec_ptr = STRING_PTR(tmp);
      |                              ^
fatal error: too many errors emitted, stopping now [-ferror-limit=]
27 warnings and 20 errors generated.
make: *** [COMPASS_c.o] Error 1
ERROR: compilation failed for package ‘COMPASS’
* removing ‘/private/var/folders/r0/l4fjk6cj5xj0j3brt4bplpl40000gt/T/RtmpUugQbw/Rinst1751567f185c/COMPASS’
      -----------------------------------
ERROR: package installation failed