| Back to Build/check report for BioC 3.24: simplified long |
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This page was generated on 2026-05-21 11:33 -0400 (Thu, 21 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4936 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1460/2378 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ndexr 1.35.0 (landing page) Florian Auer
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| See other builds for ndexr in R Universe. | ||||||||||||||
|
To the developers/maintainers of the ndexr package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ndexr.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: ndexr |
| Version: 1.35.0 |
| Command: /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 ndexr |
| StartedAt: 2026-05-20 19:12:29 -0400 (Wed, 20 May 2026) |
| EndedAt: 2026-05-20 19:12:36 -0400 (Wed, 20 May 2026) |
| EllapsedTime: 6.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 ndexr
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* checking for file ‘ndexr/DESCRIPTION’ ... OK
* preparing ‘ndexr’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘ndexr-vignette.Rmd’ using rmarkdown
Quitting from ndexr-vignette.Rmd:124-137 [unnamed-chunk-9]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `ndex_helper_encodeParams()`:
! Helper: Encode Parameter: Parameter "network" has neither a value nor a default value!
---
Backtrace:
▆
1. └─ndexr::ndex_network_get_summary(ndexcon, networkId)
2. └─ndexr:::ndex_helper_encodeParams(api$url, api$params, network = networkId)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'ndexr-vignette.Rmd' failed with diagnostics:
Helper: Encode Parameter: Parameter "network" has neither a value nor a default value!
--- failed re-building ‘ndexr-vignette.Rmd’
SUMMARY: processing the following file failed:
‘ndexr-vignette.Rmd’
Error: Vignette re-building failed.
Execution halted