Mike Morgan
| Snapshot Date: 2026-05-18 13:45 -0400 (Mon, 18 May 2026) |
| git_url: https://git.bioconductor.org/packages/miloR |
| git_branch: devel |
| git_last_commit: ff744bb |
| git_last_commit_date: 2026-05-11 17:26:50 -0400 (Mon, 11 May 2026) |
| Back to Multiple platform build/check report for BioC 3.24: simplified long |
|
This page was generated on 2026-05-19 12:54 -0400 (Tue, 19 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4898 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 Patched (2026-05-01 r89994) -- "Because it was There" | 4617 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1317/2377 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| miloR 2.9.1 (landing page) Mike Morgan
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | OK | OK | | |||||||||
| See other builds for miloR in R Universe. | ||||||||||||||
|
To the developers/maintainers of the miloR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/miloR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: miloR |
| Version: 2.9.1 |
| Command: /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 miloR |
| StartedAt: 2026-05-18 18:53:46 -0400 (Mon, 18 May 2026) |
| EndedAt: 2026-05-18 19:09:26 -0400 (Mon, 18 May 2026) |
| EllapsedTime: 939.9 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 miloR
###
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* checking for file ‘miloR/DESCRIPTION’ ... OK
* preparing ‘miloR’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘milo_contrasts.Rmd’ using rmarkdown
--- finished re-building ‘milo_contrasts.Rmd’
--- re-building ‘milo_demo.Rmd’ using rmarkdown
--- finished re-building ‘milo_demo.Rmd’
--- re-building ‘milo_gastrulation.Rmd’ using rmarkdown
Quitting from milo_gastrulation.Rmd:420-426 [unnamed-chunk-36]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `plotNhoodExpressionGroups()`:
! features is empty
---
Backtrace:
▆
1. └─miloR::plotNhoodExpressionGroups(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'milo_gastrulation.Rmd' failed with diagnostics:
features is empty
--- failed re-building ‘milo_gastrulation.Rmd’
--- re-building ‘milo_glmm.Rmd’ using rmarkdown
Warning: call dbDisconnect() when finished working with a connection
--- finished re-building ‘milo_glmm.Rmd’
SUMMARY: processing the following file failed:
‘milo_gastrulation.Rmd’
Error: Vignette re-building failed.
Execution halted