| Back to Multiple platform build/check report for BioC 3.24: simplified long |
|
This page was generated on 2026-05-19 12:54 -0400 (Tue, 19 May 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) | x86_64 | 4.6.0 RC (2026-04-17 r89917) -- "Because it was There" | 4898 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | 4.6.0 Patched (2026-05-01 r89994) -- "Because it was There" | 4617 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1711/2377 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| R453Plus1Toolbox 1.63.0 (landing page) Hans-Ulrich Klein
| nebbiolo2 | Linux (Ubuntu 24.04.4 LTS) / x86_64 | ERROR | ERROR | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | ERROR | ERROR | skipped | ||||||||||
| See other builds for R453Plus1Toolbox in R Universe. | ||||||||||||||
|
To the developers/maintainers of the R453Plus1Toolbox package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/R453Plus1Toolbox.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: R453Plus1Toolbox |
| Version: 1.63.0 |
| Command: /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD INSTALL R453Plus1Toolbox |
| StartedAt: 2026-05-18 15:56:31 -0400 (Mon, 18 May 2026) |
| EndedAt: 2026-05-18 15:56:46 -0400 (Mon, 18 May 2026) |
| EllapsedTime: 15.5 seconds |
| RetCode: 1 |
| Status: ERROR |
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### Running command:
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### /home/biocbuild/bbs-3.24-bioc/R/bin/R CMD INSTALL R453Plus1Toolbox
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* installing to library ‘/home/biocbuild/bbs-3.24-bioc/R/site-library’
* installing *source* package ‘R453Plus1Toolbox’ ...
** this is package ‘R453Plus1Toolbox’ version ‘1.63.0’
** using staged installation
** libs
using C compiler: ‘gcc (Ubuntu 13.3.0-6ubuntu2~24.04.1) 13.3.0’
gcc -std=gnu2x -I"/home/biocbuild/bbs-3.24-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c readSFF.c -o readSFF.o
readSFF.c: In function ‘readSFF’:
readSFF.c:27:7: warning: variable ‘block_count’ set but not used [-Wunused-but-set-variable]
27 | int block_count;
| ^~~~~~~~~~~
gcc -std=gnu2x -I"/home/biocbuild/bbs-3.24-bioc/R/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -Werror=format-security -c writeSFF.c -o writeSFF.o
gcc -std=gnu2x -shared -L/home/biocbuild/bbs-3.24-bioc/R/lib -L/usr/local/lib -o R453Plus1Toolbox.so readSFF.o writeSFF.o -L/home/biocbuild/bbs-3.24-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.24-bioc/R/site-library/00LOCK-R453Plus1Toolbox/00new/R453Plus1Toolbox/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Error in matchSignature(signature, fdef, where) :
there are named arguments (‘...’) in the method signature that are missing from the generic signature, for function ‘table’
Error: unable to load R code in package ‘R453Plus1Toolbox’
Execution halted
ERROR: lazy loading failed for package ‘R453Plus1Toolbox’
* removing ‘/home/biocbuild/bbs-3.24-bioc/R/site-library/R453Plus1Toolbox’
* restoring previous ‘/home/biocbuild/bbs-3.24-bioc/R/site-library/R453Plus1Toolbox’