# mrcImageSimilarityEstimate

## Usage

    Usage: mrcImageSimilarityEstimate
    Options:
        [-i[nput]            In                  (NULL      ).as(inFile              ) ] :Essential :InputDataFile
        [-o[utput] information fileOut                 (NULL      ).as(outFile             ) ] :Optional  :OutputDataFile
        [-o[utput] Cor[relation]OutCor              (NULL      ).as(outFile             ) ] :Optional  :OutputDataFile
        [-ref[erence array of file]ref                 (stdin     ).as(inFileListNoOpen    ) ] :Essential :InputDataFiles
        [-cor[relation] file namecorfilename         (stdin     ).as(inFileListNoOpen    ) ] :Optional  :InputDataFiles
        [-cormode            cormode             (0         ).as(Integer             ) ] :Optional  :Mode
        [-ctfinfo            ctfinfo             (NULL      ).as(inFile              ) ] :Optional  :InputDataFile
        [-c[onfig]           configFile          (NULL      ).as(inFile              ) ] :Optional  :ConfigurationFile
        [-m[ode]             mode                (0         ).as(Integer             ) ] :Optional  :Mode
    ----- Additional Usage -----
    cormode:(lmrcImageCorrelation)
    0: Normal Correlation FxG*
    1: Phase  Correlation FxG*/     |FxG*|
    2: Phase  Correlation FxG*/sqrt(|FxG*|)
    3: Normalized Normal Correlation FxG*/|F||G|)
    16: (0,0) = 0
    ctfmode:1 (Phase and Amplitude)
    ctfinf format:defocus Cs kV AoverP