# mrcImagePrint

## Usage

    Usage: mrcImagePrint
    Options:
        [-i[nput]            In                  (NULL      ).as(inFile              ) ] :Essential :InputImageFile
        [-o[utput]           Out                 (stdout    ).as(outFile             ) ] :Optional  :OutputImageFile
        [-H[ighThreshold]    thresHigh           (0.0       ).as(Real                ) ] :Optional  :High Threshold
        [-L[owThreshold]     thresLow            (1.0       ).as(Real                ) ] :Optional  :Low Threshold
        [-Section            section             (z         ).as(Character           ) ] :Optional  :[z|x|y]Section: Def: z-section
        [-x[Section]         xMin                (0         ).as(Integer             )
                             xMax                (0         ).as(Integer             ) ] :Optional  :x section
        [-y[Section]         yMin                (0         ).as(Integer             )
                             yMax                (0         ).as(Integer             ) ] :Optional  :y section
        [-z[Section]         zMin                (0         ).as(Integer             )
                             zMax                (0         ).as(Integer             ) ] :Optional  :z section
        [-S[cale]            Scale               (1.0       ).as(Real                ) ] :Optional  :Scale(Centre is Bottom Left): -S 1 := 1 mm/pixel
        [-A[bsolute]S[cale]  AbScale             (1.0       ).as(Real                ) ] :Optional  :Scale(Centre is Bottom Left): -AS 1 := 1 mm/A (Real) or 1 mm/A-1 (Fourier Space)
        [-E[nlarge]          Enlarge             (1.0       ).as(Real                ) ] :Optional  :Enlargement(image center is center)
        [-center             cx                  (0.0/* in case of FT or N.x/2.0 in case of Image*/).as(Real                )
                             cy                  (0.0/* in case of FT or N.y/2.0 in case of Image */).as(Real                ) ] :Optional  :Center of a printed image
        [-C[ontour]          contourLevel        (1.0       ).as(Real                ) ... ] :Variable  :ContourLevel
        [-I[nverse]                                                                    ] :Optional  :Black is High Density.
        [-A[uto]                                                                       ] :Optional  :HighThres=Mean-SD, LowThres=Mean+SD
        [-AC[ontour]         AutoContour         (10        ).as(Integer             ) ] :Optional  :Auto Contour(thresHigh <-> mean)
        [-PC[ontour]         PeakContour         (10        ).as(Integer             ) ] :Optional  :Peak Contour(thresHigh <-> (mean+thresHigh)/2
        [-AC[ontour]2        AutoContour2        (10        ).as(Integer             ) ] :Optional  :Auto Contour2(thresHigh <-> thresLow)
        [-Y[expand]          Yexpand             (1         ).as(Real                ) ] :Optional  :Y-axis expanding
        [-RGB                Red                 (0         ).as(Real                )
                             Green               (0         ).as(Real                )
                             Blue                (0         ).as(Real                ) ] :Optional  :Contour Color Mode: RGB
        [-RGBGradient        RedFirst            (0         ).as(Real                )
                             GreenFirst          (0         ).as(Real                )
                             BlueFirst           (0         ).as(Real                )
                             RedLast             (0         ).as(Real                )
                             GreenLast           (0         ).as(Real                )
                             BlueLast            (0         ).as(Real                ) ] :Optional  :Contour Color GradientMode: RGB
        [-HSB                Hue                 (0         ).as(Real                )
                             Saturation          (0         ).as(Real                )
                             Brightness          (0         ).as(Real                ) ] :Optional  :Contour Color Mode: HSB
        [-HSBGradient        HueFirst            (0         ).as(Real                )
                             SaturationFirst     (0         ).as(Real                )
                             BrightnessFirst     (0         ).as(Real                )
                             HueLast             (0         ).as(Real                )
                             SaturationLast      (0         ).as(Real                )
                             BrightnessLast      (0         ).as(Real                ) ] :Optional  :Contour Color GradientMode: HSB
        [-LineColourRGB      LineRed             (0         ).as(Real                )
                             LineGreen           (0         ).as(Real                )
                             LineBlue            (0         ).as(Real                ) ] :Optional  :Contour Color Mode: RGB
        [-LineColourRGBGradientLineRedFirst        (0         ).as(Real                )
                             LineGreenFirst      (0         ).as(Real                )
                             LineBlueFirst       (0         ).as(Real                )
                             LineRedLast         (0         ).as(Real                )
                             LineGreenLast       (0         ).as(Real                )
                             LineBlueLast        (0         ).as(Real                ) ] :Optional  :Contour Color GradientMode: RGB
        [-LineColourHSB      LineHue             (0         ).as(Real                )
                             LineSaturation      (0         ).as(Real                )
                             LineBrightness      (0         ).as(Real                ) ] :Optional  :Contour Color Mode: HSB
        [-LineColourHSBGradientLineHueFirst        (0         ).as(Real                )
                             LineSaturationFirst (0         ).as(Real                )
                             LineBrightnessFirst (0         ).as(Real                )
                             LineHueLast         (0         ).as(Real                )
                             LineSaturationLast  (0         ).as(Real                )
                             LineBrightnessLast  (0         ).as(Real                ) ] :Optional  :Contour Color GradientMode: HSB
        [-LineChange         LineColorChange     (0.1       ).as(Real                ) ] :Optional  :Contour Color Change
        [-LineWidthStart     LineWidthStart      (0.1       ).as(Real                ) ] :Optional  :Contour Line Width Step
        [-LineWidthStep      LineWidthStep       (0.05      ).as(Real                ) ] :Optional  :Contour Line Width Step
        [-ReverseOrder                                                                 ] :Optional  :Reverse Print Order
        [-Untwist            untwist             (0.0       ).as(Real                ) ] :Optional  :Untwist Angle [degree/A], example: (-13,28) = 0.4709576
        [-UpsideDown                                                                   ] :Optional  :Upside Down
        [-Centre                                                                       ] :Optional  :Image Centre is at the centre of paper.
        [-CircleRadius       CircleRadius        (0.5       ).as(Real                ) ] :Optional  :Radius of circles in the case of imageCircles
        [-m[ode]             mode                (49        ).as(Integer             ) ] :Optional  :Mode
    ----- mode -----
    		     1: ImageDensity
    		     2: Contour(DiffrentLineWidth)
    		     4: Contour(SameLineWidth)
    		     8: BlackCircles
    		    16: Scale
    		    32: Centre Mark
    		16777216: Amplitude by AsciiFile
    		33554432: Log of Amplitude by AsciiFile
    		67108864: Phase by AsciiFile
    ----- Attention !! -----
    				-C  option is stronger than -AC and -PC
    				-PC option is stronger than -AC
    					-AC: (i+1)*(max-maen)  /(AC+1) + mean
    					-PC: (i  )*(max+mean)/2)/AC     + (max+mean)/2
    ----- Attention 2!! -----
    				-AS option is stronger than -S option
    				The default value of -AS option is ignored.
    				The default value of -S option is used.
    				Both options are applied to y-axis.