# mrcImageSinogramCorrelation

## Usage

    Usage: mrcImageSinogramCorrelation
    Options:
        [-i[nput]            In                  (NULL      ).as(inFile              ) ] :Essential :Input: in[sinogram: mrc]
        [-r[ef]              Ref                 (NULL      ).as(inFile              ) ] :Essential :Input: ref[sinogram: mrc]
        [-o[utput]           Out                 (NULL      ).as(outFile             ) ] :Essential :OutputDataFile
        [-w[eigth]           w0th                (1.0       ).as(Real                )
                             w1st                (0.0       ).as(Real                )
                             w2nd                (0.0       ).as(Real                ) ] :Optional  :Weigth for Mode: 1
        [-T[hreshold]        threshold           (0.0       ).as(Real                ) ] :Optional  :threshold for Mode: 2
        [-M[odeforCorrelation]corMode             (0         ).as(Integer             ) ] :Optional  :Mode: for Correlation
        [-L[ength]M[ode]     LengthMode          (0         ).as(Integer             ) ] :Optional  :Length Mode: for LengthCorrelation
        [-L[ength]T[hreshold]M[ode]LengthThresholdMode (0         ).as(Integer             ) ] :Optional  :Length Threshold Mode: for LengthCorrelation
        [-L[ength]T[hreshold]R[atio]LengthThresholdRatio(1.0       ).as(Real                ) ] :Optional  :ratio of threshold for LenthMode: 1
        [-L[ength]C[orrelation]M[ode]LCMode              (0         ).as(Integer             ) ] :Optional  :Mode: for LengthCorrelationMode
        [-L[ength]C[orrelation]T[hreshold]LengthCorrelationThreshold(0.0       ).as(Real                ) ] :Optional  :threshold for LengthCorrelation
        [-w[eight]L[ength]   weightLength        (1.0       ).as(Real                ) ] :Optional  :Weight for LengthCorrelation
        [-c[onfig]           configFile          (NULL      ).as(inFile              ) ] :Optional  :ConfigurationFile
        [-m[ode]             mode                (0         ).as(Integer             ) ] :Optional  :Mode

    ----- LengthMode -----
    -LM = 0 : without Length Correlation
    -LM = 1 : addition to Length Correlation (-LT)
    ----- LengthCorrelationMode -----
    -LCM = 0 : weight (-wL , -LTM , -LTR)
    -LCM = 1 : threshold (-LTM , -LTR , -LCT)
    -LCM = 2 : power weight (-LTM , -LTR , -wL)
    ----- LengthThresholdMode -----
    -LTM = 0 : Multiply derivationMax and ratio(-LTR)
    -LTM = 1 : Average of all derivation
    ----- Mode -----
    -m = 0 :    simple Correlation
    -m = 1 :    weight Correlation (addition to derivation)
    -m = 2 : threshold Correlation (addition to derivation)
    -m = 3 : power weight Correlation (addition to derivation : -LM=1 -LCM=2)