# mrcImageSymmetryFind

## Usage

    Usage: mrcImageSymmetryFind
    Options:
        [-i[nput]            In                  (NULL      ).as(inFile              ) ] :Essential :InputDataFile
        [-o[utput]           Out                 (NULL      ).as(outFile             ) ] :Optional  :Output: correlation
        [-O[utput]           Out2                (stdout    ).as(outFile             ) ] :Optional  :Output: SymmetryInformation
        [-A[verage]          Avg                 (NULL      ).as(outFile             ) ] :Optional  :Output: Average
        [-centreMode         centreMode          (1         ).as(Integer             ) ] :Optional  :Input: 0 : Gravity of Centre; 1 : Search n-fold
        [-t1[threshold1]     threshold1          (1.8       ).as(Real                ) ] :Optional  :Threshold of CheckByAdd
        [-t2[threshold2]     threshold2          (0.9       ).as(Real                ) ] :Optional  :Threshold in deciding the symmetry number
        [-m1[mode1]          mode1               (3         ).as(Integer             ) ] :Optional  :Mode of Check
        [-m2[mode2]          mode2               (2         ).as(Integer             ) ] :Optional  :Mode of Substruction
        [-dr[delta r]        dr                  (1         ).as(Real                ) ] :Optional  :Delta r of outputfile.
        [-dtheta[delta theta]dtheta              (1         ).as(Real                ) ] :Optional  :Delta theta of outputfile.[DEGREE]
        [-n[umber]           n                   (10        ).as(Integer             ) ] :Optional  :Check to the number.
        [-n[umber]Range      nmin                (2         ).as(Integer             )
                             nmax                (10        ).as(Integer             ) ] :Optional  :Check to the number.
        [-In                 Image               (NULL      ).as(inFileList          )
                             Back                (NULL      ).as(inFileList          ) ] :Optional  :InputDataFile: Image and Back
        [-rangex             minx                (-3        ).as(Real                )
                             maxx                (3         ).as(Real                )
                             delx                (1         ).as(Real                ) ] :Optional  :Input:
        [-rangey             miny                (-3        ).as(Real                )
                             maxy                (3         ).as(Real                )
                             dely                (1         ).as(Real                ) ] :Optional  :Input:
        [-rangez             minz                (0         ).as(Real                )
                             maxz                (0         ).as(Real                )
                             delz                (1         ).as(Real                ) ] :Optional  :Input:
        [-rrange             rmin                (0         ).as(Real                )
                             rmax                (-1        ).as(Real                ) ] :Optional  :Input: Rrange[A]
        [-Algorythm                                                                    ] :Optional  :Algorythm
        [-c[onfig]           configFile          (NULL      ).as(inFile              ) ] :Optional  :ConfigurationFile
    ----- Additional Usage -----
    >>>> check type mode
        1 : Check by Add
        2 : Check by Correlation
        4 : Check by Fourier
        8 : Check by TTest
        16 : Check by SRP
    >>>> centre type mode
        0 : Centre is GC (gravity of centre)
        1 : Centre is Rotational Symmetry
        2 : Centre is at Image Centre
        3 : Centre is at Image Origin
    >>>> subtrcation type mode
        0 : No Subtraction
        1 : Mean Subtraction
        2 : Min Subtraction