# mrcImageFourierNeighborCorrelation

## Usage

    Usage: mrcImageFourierNeighborCorrelation
    Options:
        [-i[nput]            In                  (NULL      ).as(inFile::mrcImage    ) ] :Essential :Input
        [-o[utput]           Out                 (stdout    ).as(outFile::ASCII      ) ] :Optional  :Output:FNC
        [-d[elta]            delta               (0.0       ).as(Real                ) ] :Optional  :Mode
        [-C[enter]           Centre              (0         ).as(Integer             ) ] :Optional  :CentreMode
        [-M[ode]             GetMode             (0         ).as(Integer             ) ] :Optional  :PixelDataGetHowToGet: InterpolationMode
        [-FSC                                                                          ] :Optional  :Output:predicted FSC
        [-Cref                                                                         ] :Optional  :Output:Cref
        [-FSCfull                                                                      ] :Optional  :Output:FSC full
        [-NoiseWeighted      Brestore            (0.0       ).as(Real                ) ] :Optional  :NoiseWeighted: Cref*exp(-Brestore/(4*d^2)
        [-mask               InMask              (NULL      ).as(inFile::mrcImage    ) ] :Optional  :Input: Mask for FSC
        [-maskBack           InBackMask          (NULL      ).as(inFile::mrcImage    ) ] :Optional  :Input: Mask for FSC Back
        [-c[onfig]           configFile          (NULL      ).as(inFile              ) ] :Optional  :ConfigurationFile
        [-m[ode]             mode                (0         ).as(Integer             ) ] :Optional  :Mode
    ----- Additional Usage -----
    0: Centre is ImageCentre Shift: (Nx/2.0, Ny/2.0, Nz/2.0 )
    1: Centre is BottomLeft  Shift: (0,      0,      0      )
    2: Use StartN            Shift: (StartNx,StartNy,StartNz)
    Duncan Sousa, Nikolaus Grigorieff, 2007, JSB