# llDataAxisSearch

## Usage

    Usage: llDataAxisSearch
    Options:
        [-i1[nput]           In1                 (NULL      ).as(inFile              ) ] :Optional  :In: NearSide
        [-i2[nput]           In2                 (NULL      ).as(inFile              ) ] :Optional  :In: FarSide
        [-o1[utput]          Out1                (NULL      ).as(outFile             ) ] :Optional  :Out: NearSide
        [-o2[utput]          Out2                (NULL      ).as(outFile             ) ] :Optional  :Out: FarSide
        [-a[verage]          Avg                 (NULL      ).as(outFile             ) ] :Optional  :Out: Average
        [-o[utput]           Out                 (NULL      ).as(outFile             ) ] :Optional  :Out: FitParam
        [-op2[utput]         OutP2               (NULL      ).as(outFile             ) ] :Optional  :OutParam2: FitParam Distribution [mrcImage]
        [-t[ruePitch]        truePitch           (0.0       ).as(Real                ) ] :Optional  :TruePitch[A]
        [-l[ayer]            L                   (NULL      ).as(inFile              ) ] :Optional  :LayerInfo
        [-O[mega]            Omin                (0.0       ).as(Real                )
                             Omax                (0.0       ).as(Real                )
                             Odelta              (1.0       ).as(Real                ) ] :Optional  :Omega[degree]
        [-x[shift]           xmin                (-10.0     ).as(Real                )
                             xmax                (10.0      ).as(Real                )
                             xdelta              (0.1       ).as(Real                ) ] :Optional  :shiftx[A]
        [-R                  R                   (10.0      ).as(Real                ) ] :Optional  :Resolution[A]
        [-m[ode]             mode                (0         ).as(Integer             ) ] :Optional  :Mode
        [-c[onfig]           configFile          (NULL      ).as(inFile              ) ] :Optional  :ConfigurationFile
    ----- Layer Line Information File -----
    L N Weight
    ..........

    ----- Control File -----
    In1[inFile:NULL]				#In: NearSide
    In2[inFile:NULL]				#In: FarSide
    Out1[outFile:NULL]				#Out: NearSide
    Out2[outFile:NULL]				#Out: FarSide
    Avg[outFile:NULL]				#Out: Average
    Out[outFile:NULL]				#Out: FitParam
    truePitch[Real:NULL]				#TruePitch[A]
    L[inFile:NULL]				#LayerInfo
    Omin[Real:0.0]	Omax[Real:0.0]	Odelta[Real:1.0]				#Omega[degree]
    xmin[Real:-10.0]	xmax[Real:10.0]	xdelta[Real:0.1]				#shiftx[A]
    R[Real:10.0]				#Resolution[A]
    mode[Integer:0]				#Mode
    ----- Inside Axis Search Parameter File -----
    info.In1, info.In2, paraFit.Para.R*DEGREE, paraFit.Para.x.Value, paraFit.Para.Omega.Value