# mrcImageDensityNormalizationByImage

## Usage

    Usage: mrcImageDensityNormalizationByImage
    Options:
        [-i[nput]            In                  (NULL      ).as(inFile              ) ] :Essential :Test: Input
        [-r[ef]              Ref                 (NULL      ).as(inFile              ) ] :Essential :Reference: Input
        [-o[utput]           Out                 (NULL      ).as(outFile             ) ] :Essential :NormalizedImage:  Output
        [-O[utput]           OutParam            (stdout    ).as(outFile             ) ] :Optional  :Parameters:       Output
        [-D[ataForNormalizing]UsedData            (stdout    ).as(outFile             ) ] :Optional  :DataList to be used
        [-Cylinder           CCenterX            (20        ).as(Real                )
                             CCenterY            (20        ).as(Real                )
                             CMinR               (10        ).as(Real                )
                             CMaxR               (20        ).as(Real                ) ] :Optional  :Cylinder Region
        [-testBG[Region]     tstBGMin            (-3        ).as(Real                )
                             tstBGMax            (3         ).as(Real                )
                             tstBGDelta          (0.1       ).as(Real                ) ] :Optional  :SearchRegion
        [-M[ode]             fitMode             (0         ).as(Integer             ) ] :Optional  :DensityFittngMethod: Mode
        [-c[onfig]           configFile          (NULL      ).as(inFile              ) ] :Optional  :ConfigurationFile
        [-m[ode]             mode                (0         ).as(Integer             ) ] :Optional  :Mode
    ----- Additional Usage -----
    ----- Mode -----
      1: Sigma!=1.0
      2: Stdout
      4: Reversed
      8: Robust Test
    Fitting Mode
      0: Single Line
            ref    /
              ^   /   ref = A + B*tst
              |  /
              |------> tst
      1: Single Line with Background
            ref      /
              ^     /   ref = A + B*tst (tst>tstBG)
     refBG-   | ___/          refBG     (tst tst
                   |
                  tstBG