# mrcImageShapeSearch

## Usage

    Usage: mrcImageShapeSearch
    Options:
        [-i[nput]            In                  (NULL      ).as(inFile::mrcImage    ) ] :Essential :Input
        [-o[utput]           Out                 (NULL      ).as(outFile::mrcImage   ) ] :Essential :Output
        [-Shape              Shape               (NULL      ).as(outFile::mrcImage   ) ] :Optional  :Output
        [-n[Cube]            nCube               (0         ).as(Integer             ) ] :Optional  :Mode
        [-Refine                                                                       ] :Optional  :Refine
        [-r[adius]           minR                (3         ).as(Integer             )
                             maxR                (5         ).as(Integer             )
                             delR                (1         ).as(Integer             ) ] :Optional  :Radius[pixel]
        [-l[ength]           minL                (3         ).as(Integer             )
                             maxL                (5         ).as(Integer             )
                             delL                (1         ).as(Integer             ) ] :Optional  :Length[pixel]
        [-Phi                minPhi              (0.0       ).as(Real                )
                             maxPhi              (359.0     ).as(Real                )
                             delPhi              (45.0      ).as(Real                ) ] :Optional  :around z-axis[degree]
        [-Theta              minTheta            (0.0       ).as(Real                )
                             maxTheta            (359.0     ).as(Real                )
                             delTheta            (45.0      ).as(Real                ) ] :Optional  :around x-axis[degree]
        [-Psi                minPsi              (0.0       ).as(Real                )
                             maxPsi              (350.0     ).as(Real                )
                             delPsi              (45.0      ).as(Real                ) ] :Optional  :around x-axis[degree]
        [-thres[Zscore]      thresZscore         (1.0       ).as(Real                ) ] :Optional  :Zscore
        [-interp[olationMode]interpMode          (0         ).as(Integer             ) ] :Optional  :interpMode
        [-O[utput]V[ector]BILDOutVectorBILD       (NULL      ).as(outFile::BILD       ) ] :Optional  :Output:BILD-vector
        [-O[utput]V[ector]   OutVector           (NULL      ).as(String              ) ] :Optional  :Output:vector basename
        [-arrow[Shape]       ArrowR1             (0.1       ).as(Real                )
                             ArrowR2             (0.4       ).as(Real                )
                             ArrowRho            (0.75      ).as(Real                ) ] :Optional  :ArrowShape
        [-zoom[Vector]       ZoomVector          (1.0       ).as(Real                ) ] :Optional  :Zoom
        [-arrowColorDisk     ArrowColorDisk0     (0.0       ).as(Real                )
                             ArrowColorDisk1     (1.0       ).as(Real                )
                             ArrowColorDisk2     (0.0       ).as(Real                ) ] :Optional  :ArrowColorDisk
        [-arrowColorSylinder ArrowColorSylinder0 (1.0       ).as(Real                )
                             ArrowColorSylinder1 (0.0       ).as(Real                )
                             ArrowColorSylinder2 (0.0       ).as(Real                ) ] :Optional  :ArrowColorSylinder
        [-c[onfig]           configFile          (NULL      ).as(inFile              ) ] :Optional  :ConfigurationFile
        [-m[ode]             mode                (0         ).as(Integer             ) ] :Optional  :Mode
    ----- Additional Usage -----
    0: Cylinder with radius and length
    1: Disk with radius and length(thickness)
    2: Sphere with radius