# mrcImagesSinogramCorrelation

## Usage

    Usage: mrcImagesSinogramCorrelation
    Options:
        [-I[nputList]        In                  (NULL      ).as(inFileList          ) ] :Essential :InputDataFileList
        [-o[utput]H[eader]   OutHeader           (test      ).as(String              ) ] :Optional  :OutputDataFileHeader
        [-R[sults]d[irectoryname]Rd                  (Result    ).as(String              ) ] :Optional  :output results directory name
        [-N[ormalCorrelation]d[irectoryname]Nd                  (Normal    ).as(String              ) ] :Optional  :directory name of output normalcorrelation in results directory
        [-D[erivation]1[DCorrelation]d[irectoryname]D1d                 (Derivation1D).as(String              ) ] :Optional  :directory name of output derivation1Dcorrelation in results directory
        [-D[erivation]2[DCorrelation]d[irectoryname]D2d                 (Derivation2D).as(String              ) ] :Optional  :directory name of output derivation2Dcorrelation in results directory
        [-L[engthCorrelation]d[irectoryname]Ld                  (Length    ).as(String              ) ] :Optional  :directory name of output lengthcorrelation in results directory
        [-C[orrelation]E[xtension]CorrelationExtension(cor       ).as(String              ) ] :Optional  :output correlation file extension
        [-L[ist]E[xtension]  ListExtension       (list      ).as(String              ) ] :Optional  :output file list extension
        [-c[onfig]           configFile          (NULL      ).as(inFile              ) ] :Optional  :ConfigurationFile
        [-m[ode]             mode                (0         ).as(Integer             ) ] :Optional  :Mode
        [-N[ormalCorrelation]m[ode]Nmode               (0         ).as(Integer             ) ] :Optional  :
        [-D[erivation]1[DCorrelation]m[ode]D1mode              (0         ).as(Integer             ) ] :Optional  :
        [-D[erivation]2[DCorrelation]m[ode]D2mode              (0         ).as(Integer             ) ] :Optional  :
        [-L[engthCorrelation]m[ode]Lmode               (0         ).as(Integer             ) ] :Optional  :
        [-L[ength]T[hreshold]M[ode]LengthThresholdMode (0         ).as(Integer             ) ] :Optional  :LengthThresholdMode
        [-L[ength]T[hreshold]M[ode]LengthThresholdRatio(0.25      ).as(Real                ) ] :Optional  :LengthThresholdRatio
        [-C[reate]M[ode]     CM                  (0         ).as(Integer             ) ] :Optional  :CreateMode

    ----- create mode -----
    -CM : 0 : image of correlation and list
          1 : list only

    ----- mode -----
    >>Nmode  : 0 :     creat normal correlation       (-Nd)
               1 : not creat normal correlation
    >>D1mode : 0 :     creat derivation1D correlation (-D1d)
               1 : not creat derivation1D correlation
    >>D2mode : 0 :     creat derivation2D correlation (-D2d)
               1 : not creat derivation2D correlation
    >>Lmode  : 0 :     creat length correlation       (-Ld, -LTM, -LTR)
               1 : not creat length correlation

    ----- directory and file -----
    >>create directory : Rd
                       : Rd/Nd (D1d, D2d, Ld)

    >>create list file        : Rd/Nd/oH-Nd.LE
                               (Result/Normal/test-Normal.list)

    >>create correlation file : Rd/Nd/infile1_infile2.Nd.CE
                               (Result/Normal/test1_test2.Normal.cor)