# mrcRefImageCorrelation

## Usage

    Usage: mrcRefImageCorrelation
    Options:
        [-i[nput]            In                  (NULL      ).as(inFile              ) ] :Optional  :InputDataFile
        [-r[eference]        Ref                 (NULL      ).as(inFile              ) ] :Essential :ReferenceDataFile
        [-c[onfig]           configFile          (NULL      ).as(inFile              ) ] :Optional  :ConfigurationFile
        [-m[ode]             mode                (0         ).as(Integer             ) ] :Optional  :Mode
        [-I[nput array of file]InArray             (stdin     ).as(inFileList          ) ] :Optional  :InputDataFiles
        [-z[position]        z                   (0         ).as(Integer             ) ] :Optional  :z position of reference file to correlate.For mode 1 only
    ----- Additional Usage -----
    mode 0: To find the images in the reference file of min and max correlation.  Correlation is calclated in the real space.
    mode 1: To calculate the correlation between one image of the reference file and input file.  The calculation is performed in the fourier space and the output is a mrc image file.  option z is needed.