## Information from source codes

## Crystal.h

    #ifndef CRYSTAL_H
    #define CRYSTAL_H

    #include

    /* struct begin */

    typedef enum CrystalSpaceGroup {
    	CrystalSpaceGroupP1=0,
    	CrystalSpaceGroupHelical=1
    } CrystalSpaceGroup;

    #ifdef __CRYSTALINIT__
    char* CrystalSpaceGroupString[] = {
    	"P1",
    	"HelicalSymmmetry",
    	NULL
    };
    #else
    extern char* CrystalSpaceGroupString[];
    #endif

    typedef float CrystalParaTypeReal;
    typedef int   CrystalParaTypeInteger;

    typedef struct CrystalParaTypeRealCoord {
    	CrystalParaTypeReal x;
    	CrystalParaTypeReal y;
    	CrystalParaTypeReal z;
    } CrystalParaTypeRealCoord;

    typedef struct CrystalParaTypeIntegerCoord {
    	CrystalParaTypeInteger x;
    	CrystalParaTypeInteger y;
    	CrystalParaTypeInteger z;
    } CrystalParaTypeIntegerCoord;

    typedef struct CrystalParaTypeRealAxis {
    	CrystalParaTypeReal a;
    	CrystalParaTypeReal b;
    	CrystalParaTypeReal c;
    } CrystalParaTypeRealAxis;

    typedef struct CrystalParaTypeIntegerAxis {
    	CrystalParaTypeInteger a;
    	CrystalParaTypeInteger b;
    	CrystalParaTypeInteger c;
    } CrystalParaTypeIntegerAxis;

    typedef struct HelicalSymmetryInfo {
    	CrystalParaTypeInteger t;         /* Turn */
    	CrystalParaTypeInteger u;         /* Unit */
    	CrystalParaTypeInteger n;         /* n-strands */

    	/*
    		Don't change the below variables directly,
    		bacause the variables can be calculated by the upper's.
    	*/
    	CrystalParaTypeReal    dz;     /* dz     = TruePitch/unit */
    	CrystalParaTypeReal    dphi;   /* dphi   = 2*PI*turn/unit */
    } HelicalSymmetryInfo;

    typedef struct CrystalInfo {
    	CrystalParaTypeRealCoord    aAxis;    /* Unit Cell Vector : a-axis : Length = 1 */
    	CrystalParaTypeRealCoord    bAxis;    /* Unit Cell Vector : b-axis : Length = 1 */
    	CrystalParaTypeRealCoord    cAxis;    /* Unit Cell Vector : c-axis : Length = 1 */
    	CrystalParaTypeRealAxis     CellLength;    /* Unit Cell Size   a, b, c-axis [A] */
    	CrystalParaTypeRealCoord    Origin;        /* Unit Cell Origin [A] */
    	CrystalParaTypeIntegerAxis  N;             /* Number of Unit Cells a, b, c-axis */
    	CrystalParaTypeIntegerAxis  StartN;        /* Start  of Unit Cells a, b, c-axis */
    	CrystalSpaceGroup           SpaceGroup;

    	/* Information for Special Symmetry */
    	HelicalSymmetryInfo HelixInfo;
    		/* For HelicalSymmetry :
    			The filament axis (z-axis) is treated as the c-axis.
    			The azimuthal axis (phi-axis) is treated as the b-axis.
    			The radius axis (r-axis) is treated as the a-axis.
    		*/
    } CrystalInfo;

    /* struct end */

    /* prototype begin */

    #ifdef __cplusplus
    	extern "C" {
    #endif
    extern void crystalInit(CrystalInfo* crystal);

    extern void crystalSpaceGroupPrint(FILE* fpt, int mode);

    extern void crystalInfoRead(FILE* fpt, CrystalInfo* linfo, int mode);
    extern void crystalInfoWrite(FILE* fpt, CrystalInfo* linfo, int mode);
    extern void crystalInfoFileFormat(FILE* fpt, int mode);

    extern void crystalCellLengthSet(CrystalInfo* C, char axis, CrystalParaTypeReal length, int mode);
    extern void crystalAxisSet(CrystalInfo* C, char axis, CrystalParaTypeReal x, CrystalParaTypeReal y, CrystalParaTypeReal z, int mode);
    extern void crystalCellLengthSetUsingAxis(CrystalInfo* C, char axis, int mode);
    extern void crystalAxisSetUsingCellLength(CrystalInfo* C, char axis, int mode);

    #ifdef __cplusplus
    	};
    #endif

    /* prototype end */

    #endif /* CRYSTAL_H */