# mrcImageSolventFlattening

## Usage

    Usage: mrcImageSolventFlattening
    Options:
        [-i[nput]            In                  (NULL      ).as(inFile              ) ] :Essential :InputDataFile
        [-o[utput]           Out                 (NULL      ).as(outFile             ) ] :Essential :OutputDataFile
        [-c[onfig]           configFile          (NULL      ).as(inFile              ) ] :Optional  :ConfigurationFile
        [-rmax               rmax                (190       ).as(Real                ) ] :Optional  :rmax [A]
        [-sd                 Range               (0         ).as(Real                ) ] :Optional  :Assign voxels below MeanOfSolvent+Range*SDofSolvent as Solvent
        [-density            density             (0         ).as(Real                ) ] :Optional  :embed mean lower than density value
        [-Floating                                                                     ] :Optional  :data minus mean of Solvent
        [-oparam[eter]       OutParam            (stdout    ).as(outFile             ) ] :Optional  :Output: Parameters
        [-m[ode]             mode                (0         ).as(Integer             ) ] :Optional  :Mode
    ----- Additional Usage -----
    -m 0: mean of all density
       1: mean of sphere surface density at rmax
       2: mean of cylinder surface density at rmax
       6: mean of 2D Edge X=0 or N.x-1
    -SD range : assign the voxels whose density is less than maen + range*SD as solvent range
    -density is stronger than -m