# mrcImage1dShiftAverageByAnnealing

## Usage

    Usage: mrcImage1dShiftAverageByAnnealing
    Options:
        [-i[nput]            In                  (NULL      ).as(inFile              ) ] :Essential :InputDataFile
        [-s[ignal position]  Signal              (NULL      ).as(inFile              ) ] :Essential :File to define position of signal
        [-o[utput]           Out                 (NULL      ).as(outFile             ) ] :Essential :OutputDataFile
        [-r[ange]            range               (0         ).as(Integer             ) ] :Optional  :Search range of shift.Default:Nx
        [-d[elta]            delta               (1.0       ).as(Real                ) ] :Optional  :Spacing of molecule(Pixel).
        [-T[eperature]       temperature         (1.0       ).as(Real                ) ] :Optional  :Initial temperature.
        [-iter[ation]        iter                (1000      ).as(Integer             ) ] :Optional  :Number of iteration before reducing temperature.
        [-eps[ilon]          eps                 (0.001     ).as(Real                ) ] :Optional  :Temperature(T) reduced to (1-epsilon)T.
        [-tol                tol                 (1e-2      ).as(Real                ) ] :Optional  :Number to identify convergence
        [-c[onfig]           configFile          (NULL      ).as(inFile              ) ] :Optional  :ConfigurationFile
        [-m[ode]             mode                (0         ).as(Integer             ) ] :Optional  :Mode
        [-M[ode2]            mode2               (0         ).as(Integer             ) ] :Optional  :Mode2
    ----- mode -----
    0:All search
    1:annealing method
    2:mode 1 and refine by powel.
    3:mode 1 and refine by annealing.
    ----- mode2 -----
    0:by amplitude
    1:by power
    2:by amplitude using only phase
    3:by power using only phase
    4:by amplitude using S/sqrt(S)
    5:by power using only  S/sqrt(S)