aiida.engine#
Package Contents#
Classes#
Functions#
Data#
External#
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API#
- class aiida.engine.AiiDAPersister#
Bases:
plumpy.persistence.Persister- save_checkpoint(process: aiida.engine.processes.process.Process, tag: Optional[str] = None)#
- load_checkpoint(pid: Hashable, tag: Optional[str] = None) plumpy.persistence.Bundle#
- get_checkpoints()#
- get_process_checkpoints(pid: Hashable)#
- delete_checkpoint(pid: Hashable, tag: Optional[str] = None) None#
- delete_process_checkpoints(pid: Hashable)#
- class aiida.engine.Awaitable#
Bases:
plumpy.utils.AttributesDict
- class aiida.engine.AwaitableAction(*args, **kwds)#
Bases:
enum.EnumInitialization
- ASSIGN = 'assign'#
- APPEND = 'append'#
- class aiida.engine.AwaitableTarget(*args, **kwds)#
Bases:
enum.EnumInitialization
- PROCESS = 'process'#
- class aiida.engine.BaseRestartWorkChain(*args, **kwargs)#
Bases:
aiida.engine.processes.workchains.workchain.WorkChainInitialization
- _process_class: Optional[Type[aiida.engine.processes.Process]] = None#
- _considered_handlers_extra = 'considered_handlers'#
- property process_class: Type[aiida.engine.processes.process.Process]#
- classmethod define(spec: aiida.engine.processes.ProcessSpec) None#
- setup() None#
- should_run_process() bool#
- run_process() aiida.engine.processes.workchains.context.ToContext#
- inspect_process() Optional[aiida.engine.processes.ExitCode]#
- get_outputs(node) Mapping[str, aiida.orm.Node]#
- results() Optional[aiida.engine.processes.ExitCode]#
- classmethod is_process_handler(process_handler_name: Union[str, types.FunctionType]) bool#
- classmethod get_process_handlers() List[types.FunctionType]#
- get_process_handlers_by_priority() List[Tuple[int, types.FunctionType]]#
- on_terminated()#
- _wrap_bare_dict_inputs(port_namespace: aiida.engine.processes.PortNamespace, inputs: Dict[str, Any]) aiida.common.AttributeDict#
- class aiida.engine.CalcJob(*args, **kwargs)#
Bases:
aiida.engine.processes.process.ProcessInitialization
- _node_class = None#
- _spec_class = None#
- link_label_retrieved: str = 'retrieved'#
- classmethod define(spec: aiida.engine.processes.process_spec.CalcJobProcessSpec) None#
- spec_options()#
- classmethod get_importer(entry_point_name: str | None = None) aiida.engine.processes.calcjobs.importer.CalcJobImporter#
- property options: aiida.common.AttributeDict#
- classmethod get_state_classes() Dict[Hashable, Type[plumpy.process_states.State]]#
- property node: aiida.orm.CalcJobNode#
- on_terminated() None#
- run() Union[plumpy.process_states.Stop, int, plumpy.process_states.Wait]#
- abstract prepare_for_submission(folder: aiida.common.folders.Folder) aiida.common.datastructures.CalcInfo#
- _setup_metadata(metadata: dict) None#
- _setup_inputs() None#
- _perform_dry_run()#
- _perform_import()#
- parse(retrieved_temporary_folder: Optional[str] = None, existing_exit_code: aiida.engine.processes.exit_code.ExitCode | None = None) aiida.engine.processes.exit_code.ExitCode#
- static terminate(exit_code: aiida.engine.processes.exit_code.ExitCode) aiida.engine.processes.exit_code.ExitCode#
- parse_scheduler_output(retrieved: aiida.orm.Node) Optional[aiida.engine.processes.exit_code.ExitCode]#
- parse_retrieved_output(retrieved_temporary_folder: Optional[str] = None) Optional[aiida.engine.processes.exit_code.ExitCode]#
- presubmit(folder: aiida.common.folders.Folder) aiida.common.datastructures.CalcInfo#
- class aiida.engine.CalcJobImporter#
Bases:
abc.ABC- abstract static parse_remote_data(remote_data: aiida.orm.RemoteData, **kwargs) Dict[str, Union[aiida.orm.Node, Dict]]#
- class aiida.engine.CalcJobOutputPort(*args, **kwargs)#
Bases:
plumpy.ports.OutputPortInitialization
- property pass_to_parser: bool#
- class aiida.engine.CalcJobProcessSpec#
Bases:
aiida.engine.processes.process_spec.ProcessSpecInitialization
- OUTPUT_PORT_TYPE = None#
- property default_output_node: Optional[str]#
- class aiida.engine.DaemonClient(profile: aiida.manage.configuration.profile.Profile)#
Initialization
- DAEMON_ERROR_NOT_RUNNING = 'daemon-error-not-running'#
- DAEMON_ERROR_TIMEOUT = 'daemon-error-timeout'#
- _DAEMON_NAME = 'aiida-{name}'#
- _ENDPOINT_PROTOCOL = None#
- property profile: aiida.manage.configuration.profile.Profile#
- property daemon_name: str#
- property _verdi_bin: str#
- cmd_start_daemon(number_workers: int = 1, foreground: bool = False) list[str]#
- property cmd_start_daemon_worker: list[str]#
- property loglevel: str#
- property virtualenv: str | None#
- property circus_log_file: str#
- property circus_pid_file: str#
- property circus_port_file: str#
- property circus_socket_file: str#
- property circus_socket_endpoints: dict[str, str]#
- property daemon_log_file: str#
- property daemon_pid_file: str#
- get_circus_port() int#
- static get_env() dict[str, str]#
- get_circus_socket_directory() str#
- get_daemon_pid() int | None#
- property is_daemon_running: bool#
- delete_circus_socket_directory() None#
- classmethod get_available_port()#
- get_controller_endpoint()#
- get_pubsub_endpoint()#
- get_stats_endpoint()#
- get_ipc_endpoint(endpoint)#
- get_tcp_endpoint(port=None)#
- get_client() circus.client.CircusClient#
- call_client(command: aiida.engine.daemon.client.JsonDictType) aiida.engine.daemon.client.JsonDictType#
- get_status() aiida.engine.daemon.client.JsonDictType#
- get_numprocesses() aiida.engine.daemon.client.JsonDictType#
- get_worker_info() aiida.engine.daemon.client.JsonDictType#
- get_daemon_info() aiida.engine.daemon.client.JsonDictType#
- increase_workers(number: int) aiida.engine.daemon.client.JsonDictType#
- decrease_workers(number: int) aiida.engine.daemon.client.JsonDictType#
- stop_daemon(wait: bool = True, timeout: int = 5) aiida.engine.daemon.client.JsonDictType#
- restart_daemon(wait: bool) aiida.engine.daemon.client.JsonDictType#
- start_daemon(number_workers: int = 1, foreground: bool = False, timeout: int = 5) None#
- static _await_condition(condition: Callable, exception: Exception, timeout: int = 5, interval: float = 0.1)#
- _start_daemon(number_workers: int = 1, foreground: bool = False) None#
- class aiida.engine.ExitCode#
Bases:
typing.NamedTuple- status: int = 0#
- message: Optional[str] = None#
- invalidates_cache: bool = False#
- format(**kwargs: str) aiida.engine.processes.exit_code.ExitCode#
- class aiida.engine.ExitCodesNamespace(dictionary=None)#
Bases:
aiida.common.extendeddicts.AttributeDictInitialization
- __call__(identifier: Union[int, str]) aiida.engine.processes.exit_code.ExitCode#
- class aiida.engine.FunctionProcess(*args, **kwargs)#
Bases:
aiida.engine.processes.process.ProcessInitialization
- _func_args: Sequence[str] = ()#
- static _func(*_args, **_kwargs) dict#
- static build(func: Callable[..., Any], node_class: Type[aiida.orm.ProcessNode]) Type[aiida.engine.processes.functions.FunctionProcess]#
- classmethod validate_inputs(*args: Any, **kwargs: Any) None#
- classmethod create_inputs(*args: Any, **kwargs: Any) Dict[str, Any]#
- classmethod args_to_dict(*args: Any) Dict[str, Any]#
- classmethod get_or_create_db_record() aiida.orm.ProcessNode#
- property process_class: Callable[..., Any]#
- execute() Optional[Dict[str, Any]]#
- _setup_db_record() None#
- run() Optional[aiida.engine.processes.exit_code.ExitCode]#
- class aiida.engine.InputPort(*args, **kwargs)#
Bases:
aiida.engine.processes.ports.WithSerialize,aiida.engine.processes.ports.WithNonDb,plumpy.ports.InputPortInitialization
- get_description() Dict[str, str]#
- class aiida.engine.InterruptableFuture(*, loop=None)#
Bases:
asyncio.FutureInitialization
- interrupt(reason: Exception) None#
- async with_interrupt(coro: Awaitable[Any]) Any#
- class aiida.engine.JobManager(transport_queue: aiida.engine.transports.TransportQueue)#
Initialization
- get_jobs_list(authinfo: aiida.orm.AuthInfo) aiida.engine.processes.calcjobs.manager.JobsList#
- request_job_info_update(authinfo: aiida.orm.AuthInfo, job_id: Hashable) Iterator[asyncio.Future[JobInfo]]#
- class aiida.engine.JobsList(authinfo: aiida.orm.AuthInfo, transport_queue: aiida.engine.transports.TransportQueue, last_updated: Optional[float] = None)#
Initialization
- property logger: logging.Logger#
- get_minimum_update_interval() float#
- property last_updated: Optional[float]#
- async _get_jobs_from_scheduler() Dict[Hashable, aiida.schedulers.datastructures.JobInfo]#
- async _update_job_info() None#
- _ensure_updating() None#
- static _has_job_state_changed(old: Optional[aiida.schedulers.datastructures.JobInfo], new: Optional[aiida.schedulers.datastructures.JobInfo]) bool#
- _get_next_update_delay() float#
- _update_requests_outstanding() bool#
- _get_jobs_with_scheduler() List[str]#
- class aiida.engine.ObjectLoader#
Bases:
plumpy.loaders.DefaultObjectLoader- load_object(identifier: str) Any#
- aiida.engine.OutputPort = None#
- aiida.engine.PORT_NAMESPACE_SEPARATOR = '__'#
- exception aiida.engine.PastException#
Bases:
aiida.common.exceptions.AiidaExceptionInitialization
- class aiida.engine.PortNamespace(*args, **kwargs)#
Bases:
aiida.engine.processes.ports.WithNonDb,plumpy.ports.PortNamespaceInitialization
- __setitem__(key: str, port: plumpy.ports.Port) None#
- static validate_port_name(port_name: str) None#
- serialize(mapping: Optional[Dict[str, Any]], breadcrumbs: Sequence[str] = ()) Optional[Dict[str, Any]]#
- class aiida.engine.Process(inputs: Optional[Dict[str, Any]] = None, logger: Optional[logging.Logger] = None, runner: Optional[aiida.engine.runners.Runner] = None, parent_pid: Optional[int] = None, enable_persistence: bool = True)#
Bases:
plumpy.processes.ProcessInitialization
- _node_class = None#
- _spec_class = None#
- SINGLE_OUTPUT_LINKNAME: str = 'result'#
- classmethod spec() aiida.engine.processes.process_spec.ProcessSpec#
- classmethod define(spec: aiida.engine.processes.process_spec.ProcessSpec) None#
- classmethod get_builder() aiida.engine.processes.builder.ProcessBuilder#
- classmethod get_or_create_db_record() aiida.orm.ProcessNode#
- init() None#
- classmethod get_exit_statuses(exit_code_labels: Iterable[str]) List[int]#
- exit_codes() aiida.engine.processes.exit_code.ExitCodesNamespace#
- spec_metadata() aiida.engine.processes.ports.PortNamespace#
- property node: aiida.orm.ProcessNode#
- property uuid: str#
- property metadata: aiida.common.extendeddicts.AttributeDict#
- _save_checkpoint() None#
- save_instance_state(out_state: MutableMapping[str, Any], save_context: Optional[plumpy.persistence.LoadSaveContext]) None#
- get_provenance_inputs_iterator() Iterator[Tuple[str, Union[aiida.engine.processes.ports.InputPort, aiida.engine.processes.ports.PortNamespace]]]#
- load_instance_state(saved_state: MutableMapping[str, Any], load_context: plumpy.persistence.LoadSaveContext) None#
- kill(msg: Union[str, None] = None) Union[bool, plumpy.futures.Future]#
- out(output_port: str, value: Any = None) None#
- out_many(out_dict: Dict[str, Any]) None#
- on_create() None#
- on_entered(from_state: Optional[plumpy.process_states.State]) None#
- on_terminated() None#
- on_except(exc_info: Tuple[Any, Exception, types.TracebackType]) None#
- on_finish(result: Union[int, aiida.engine.processes.exit_code.ExitCode], successful: bool) None#
- on_paused(msg: Optional[str] = None) None#
- on_playing() None#
- on_output_emitting(output_port: str, value: Any) None#
- set_status(status: Optional[str]) None#
- submit(process: Type[aiida.engine.processes.process.Process], **kwargs) aiida.orm.ProcessNode#
- property runner: aiida.engine.runners.Runner#
- get_parent_calc() Optional[aiida.orm.ProcessNode]#
- classmethod build_process_type() str#
- report(msg: str, *args, **kwargs) None#
- _create_and_setup_db_record() Union[int, uuid.UUID]#
- encode_input_args(inputs: Dict[str, Any]) str#
- decode_input_args(encoded: str) Dict[str, Any]#
- update_outputs() None#
- _build_process_label() str#
- _setup_db_record() None#
- _setup_version_info() None#
- _setup_metadata(metadata: dict) None#
- _setup_inputs() None#
- _flat_inputs() Dict[str, Any]#
- _flat_outputs() Dict[str, Any]#
- _flatten_inputs(port: Union[None, aiida.engine.processes.ports.InputPort, aiida.engine.processes.ports.PortNamespace], port_value: Any, parent_name: str = '', separator: str = PORT_NAMESPACE_SEPARATOR) List[Tuple[str, Any]]#
- _flatten_outputs(port: Union[None, aiida.engine.processes.ports.OutputPort, aiida.engine.processes.ports.PortNamespace], port_value: Any, parent_name: str = '', separator: str = PORT_NAMESPACE_SEPARATOR) List[Tuple[str, Any]]#
- exposed_inputs(process_class: Type[aiida.engine.processes.process.Process], namespace: Optional[str] = None, agglomerate: bool = True) aiida.common.extendeddicts.AttributeDict#
- exposed_outputs(node: aiida.orm.ProcessNode, process_class: Type[aiida.engine.processes.process.Process], namespace: Optional[str] = None, agglomerate: bool = True) aiida.common.extendeddicts.AttributeDict#
- static _get_namespace_list(namespace: Optional[str] = None, agglomerate: bool = True) List[Optional[str]]#
- classmethod is_valid_cache(node: aiida.orm.ProcessNode) bool#
- class aiida.engine.ProcessBuilder(process_class: Type[aiida.engine.processes.process.Process])#
Bases:
aiida.engine.processes.builder.ProcessBuilderNamespaceInitialization
- property process_class: Type[aiida.engine.processes.process.Process]#
- _repr_pretty_(p, _) str#
- class aiida.engine.ProcessBuilderNamespace(port_namespace: aiida.engine.processes.ports.PortNamespace)#
Bases:
collections.abc.MutableMappingInitialization
- __setattr__(attr: str, value: Any) None#
- __repr__()#
- __dir__()#
- __iter__()#
- __len__()#
- __getitem__(item)#
- __setitem__(item, value)#
- __delitem__(item)#
- __delattr__(item)#
- _recursive_merge(dictionary, key, value)#
- _merge(*args, **kwds)#
- _update(*args, **kwds)#
- _inputs(prune: bool = False) dict#
- _prune(value)#
- class aiida.engine.ProcessFuture(pk: int, loop: Optional[asyncio.AbstractEventLoop] = None, poll_interval: Union[None, int, float] = None, communicator: Optional[kiwipy.Communicator] = None)#
Bases:
asyncio.FutureInitialization
- _filtered = None#
- cleanup() None#
- async _poll_process(node: aiida.orm.Node, poll_interval: Union[int, float]) None#
- class aiida.engine.ProcessHandlerReport#
Bases:
typing.NamedTuple- do_break: bool = False#
- exit_code: aiida.engine.processes.exit_code.ExitCode = None#
- class aiida.engine.ProcessSpec#
Bases:
plumpy.process_spec.ProcessSpecInitialization
- METADATA_KEY: str = 'metadata'#
- METADATA_OPTIONS_KEY: str = 'options'#
- INPUT_PORT_TYPE = None#
- PORT_NAMESPACE_TYPE = None#
- property metadata_key: str#
- property options_key: str#
- property exit_codes: aiida.engine.processes.exit_code.ExitCodesNamespace#
- exit_code(status: int, label: str, message: str, invalidates_cache: bool = False) None#
- property ports: aiida.engine.processes.ports.PortNamespace#
- property inputs: aiida.engine.processes.ports.PortNamespace#
- property outputs: aiida.engine.processes.ports.PortNamespace#
- class aiida.engine.Runner(poll_interval: Union[int, float] = 0, loop: Optional[asyncio.AbstractEventLoop] = None, communicator: Optional[kiwipy.Communicator] = None, rmq_submit: bool = False, persister: Optional[plumpy.persistence.Persister] = None)#
Initialization
- _persister: Optional[plumpy.persistence.Persister] = None#
- _communicator: Optional[kiwipy.Communicator] = None#
- _controller: Optional[plumpy.process_comms.RemoteProcessThreadController] = None#
- _closed: bool = False#
- __enter__() aiida.engine.runners.Runner#
- __exit__(exc_type, exc_val, exc_tb)#
- property loop: asyncio.AbstractEventLoop#
- property transport: aiida.engine.transports.TransportQueue#
- property persister: Optional[plumpy.persistence.Persister]#
- property communicator: Optional[kiwipy.Communicator]#
- property plugin_version_provider: aiida.plugins.utils.PluginVersionProvider#
- property job_manager: aiida.engine.processes.calcjobs.manager.JobManager#
- property controller: Optional[plumpy.process_comms.RemoteProcessThreadController]#
- property is_daemon_runner: bool#
- is_closed() bool#
- start() None#
- stop() None#
- run_until_complete(future: asyncio.Future) Any#
- close() None#
- instantiate_process(process: aiida.engine.runners.TYPE_RUN_PROCESS, **inputs)#
- submit(process: aiida.engine.runners.TYPE_SUBMIT_PROCESS, **inputs: Any)#
- schedule(process: aiida.engine.runners.TYPE_SUBMIT_PROCESS, *args: Any, **inputs: Any) aiida.orm.ProcessNode#
- _run(process: aiida.engine.runners.TYPE_RUN_PROCESS, *args: Any, **inputs: Any) Tuple[Dict[str, Any], aiida.orm.ProcessNode]#
- run(process: aiida.engine.runners.TYPE_RUN_PROCESS, *args: Any, **inputs: Any) Dict[str, Any]#
- run_get_node(process: aiida.engine.runners.TYPE_RUN_PROCESS, *args: Any, **inputs: Any) aiida.engine.runners.ResultAndNode#
- run_get_pk(process: aiida.engine.runners.TYPE_RUN_PROCESS, *args: Any, **inputs: Any) aiida.engine.runners.ResultAndPk#
- call_on_process_finish(pk: int, callback: Callable[[], Any]) None#
- get_process_future(pk: int) aiida.engine.processes.futures.ProcessFuture#
- _poll_process(node, callback)#
- aiida.engine.ToContext = None#
- class aiida.engine.WithNonDb(*args, **kwargs)#
Initialization
- property non_db_explicitly_set: bool#
- property non_db: bool#
- class aiida.engine.WithSerialize(*args, **kwargs)#
Initialization
- serialize(value: Any) aiida.orm.Data#
- class aiida.engine.WorkChain(inputs: dict | None = None, logger: logging.Logger | None = None, runner: aiida.engine.runners.Runner | None = None, enable_persistence: bool = True)#
Bases:
aiida.engine.processes.process.ProcessInitialization
- _node_class = None#
- _spec_class = None#
- _STEPPER_STATE = 'stepper_state'#
- _CONTEXT = 'CONTEXT'#
- classmethod spec() aiida.engine.processes.workchains.workchain.WorkChainSpec#
- property node: aiida.orm.WorkChainNode#
- property ctx: aiida.common.extendeddicts.AttributeDict#
- save_instance_state(out_state, save_context)#
- load_instance_state(saved_state, load_context)#
- on_run()#
- _resolve_nested_context(key: str) tuple[aiida.common.extendeddicts.AttributeDict, str]#
- _insert_awaitable(awaitable: aiida.engine.processes.workchains.awaitable.Awaitable) None#
- _resolve_awaitable(awaitable: aiida.engine.processes.workchains.awaitable.Awaitable, value: Any) None#
- to_context(**kwargs: aiida.engine.processes.workchains.awaitable.Awaitable | aiida.orm.ProcessNode) None#
- _update_process_status() None#
- run() Any#
- _do_step() Any#
- _store_nodes(data: Any) None#
- on_exiting() None#
- on_wait(awaitables: Sequence[aiida.engine.processes.workchains.awaitable.Awaitable])#
- _action_awaitables() None#
- _on_awaitable_finished(awaitable: aiida.engine.processes.workchains.awaitable.Awaitable) None#
- aiida.engine.append_(target: Union[aiida.engine.processes.workchains.awaitable.Awaitable, aiida.orm.ProcessNode]) aiida.engine.processes.workchains.awaitable.Awaitable#
- aiida.engine.assign_(target: Union[aiida.engine.processes.workchains.awaitable.Awaitable, aiida.orm.ProcessNode]) aiida.engine.processes.workchains.awaitable.Awaitable#
- aiida.engine.calcfunction(function: aiida.engine.processes.functions.FunctionType) aiida.engine.processes.functions.FunctionType#
- aiida.engine.construct_awaitable(target: Union[aiida.engine.processes.workchains.awaitable.Awaitable, aiida.orm.ProcessNode]) aiida.engine.processes.workchains.awaitable.Awaitable#
- aiida.engine.get_object_loader() aiida.engine.persistence.ObjectLoader#
- aiida.engine.interruptable_task(coro: Callable[[aiida.engine.utils.InterruptableFuture], Awaitable[Any]], loop: Optional[asyncio.AbstractEventLoop] = None) aiida.engine.utils.InterruptableFuture#
- aiida.engine.is_process_function(function: Any) bool#
- aiida.engine.process_handler(wrapped: Optional[types.FunctionType] = None, *, priority: int = 0, exit_codes: Union[None, aiida.engine.processes.exit_code.ExitCode, List[aiida.engine.processes.exit_code.ExitCode]] = None, enabled: bool = True) types.FunctionType#
- aiida.engine.run(process: aiida.engine.launch.TYPE_RUN_PROCESS, *args: Any, **inputs: Any) Dict[str, Any]#
- aiida.engine.run_get_node(process: aiida.engine.launch.TYPE_RUN_PROCESS, *args: Any, **inputs: Any) Tuple[Dict[str, Any], aiida.orm.ProcessNode]#
- aiida.engine.run_get_pk(process: aiida.engine.launch.TYPE_RUN_PROCESS, *args: Any, **inputs: Any) Tuple[Dict[str, Any], int]#
- aiida.engine.submit(process: aiida.engine.launch.TYPE_SUBMIT_PROCESS, **inputs: Any) aiida.orm.ProcessNode#
- aiida.engine.workfunction(function: aiida.engine.processes.functions.FunctionType) aiida.engine.processes.functions.FunctionType#