---
title: "Getting to Know _R_ and _Bioconductor_"
author: "Valerie Obenchain (valerie.obenchain@roswellpark.org)<br />
    Lori Shepherd (lori.shepherd@roswellpark.org)<br />
    Martin Morgan (martin.morgan@roswellpark.org)<br />
    Stanford University, Stanford, CA<br />
    25 - 26 June, 2016"
output:
  BiocStyle::html_document:
    toc: true
    toc_depth: 2
vignette: >
  % \VignetteIndexEntry{Getting to Know R / Bioconductor}
  % \VignetteEngine{knitr::rmarkdown}
---

```{r style, echo = FALSE, results = 'asis'}
BiocStyle::markdown()
options(width=100, max.print=1000)
knitr::opts_chunk$set(
    eval=as.logical(Sys.getenv("KNITR_EVAL", "TRUE")),
    cache=as.logical(Sys.getenv("KNITR_CACHE", "TRUE")))
```

The material in this session requires _R_ version 3.3 and
_Bioconductor_ version 3.4.

```{r configure-test}
stopifnot(
    getRversion() >= '3.3' && getRversion() < '3.4',
    BiocInstaller::biocVersion() == "3.4"
)
```

1. [Introduction to _R_](Lecture-r-introduction.html) (T)
2. [Introduction to _Bioconductor_](Lecture-bioc-introduction.html) (T)
3. [Sequences and Strings for Genome-Scale Data](Lecture-sequences.html) (T)
4. [Adding Annotation To Your Analysis](Lecture-annotation.html) (T)
5. [Labs Overview](Labs Overview)<br />
    [Lab 1: Introduction to _R_](L1-r-intro.html) (P) <br />
    [Lab 2: Introduction to _Bioconductor_](L2-bioc-intro.html) (P) <br />
    [Lab 3: Data Representations](L3-bioc-data-representation.html) (P)<br />
    [Lab 4: Annotation](L4-bioc-annotation.html) (P)<br />

(T): Talk; (P): Practical.
