window=25000
maf1=0.05
maf2=0.05
verbose=1
skipself=0
freepass=1
AllPairRsq=1
ResultFileBase=../examples/Single_Marker/ChrB_A
ECDFFileBase=../examples/Single_Marker/ChrB_A
number=2
chrB
chrA
../examples/Single_Marker/P1.ChrB.ped	../examples/Single_Marker/P2.ChrB.ped
../examples/Single_Marker/P1.ChrA.ped	../examples/Single_Marker/P2.ChrA.ped
../examples/Single_Marker/P1.ChrB.info	../examples/Single_Marker/P2.ChrB.info
../examples/Single_Marker/P1.ChrA.info	../examples/Single_Marker/P2.ChrA.info
