This is pdfTeX, Version 3.14159-14h-released-20010417 (Web2C 7.3.3.1) (format=pdflatex 2002.11.11)  14 MAR 2003 18:42
**/home/sandrine/Talks/EMBO03/Lab/EMBO03/inst/doc/lab3Marray.tex
(/home/sandrine/Talks/EMBO03/Lab/EMBO03/inst/doc/lab3Marray.tex{/usr/share/texm
f/pdftex/config/pdftex.cfg}
LaTeX2e <2000/06/01>
Babel <v3.7h> and hyphenation patterns for american, french, german, ngerman, i
talian, nohyphenation, loaded.
(/usr/share/texmf/tex/latex/base/article.cls
Document Class: article 2000/05/19 v1.4b Standard LaTeX document class
(/usr/share/texmf/tex/latex/base/size12.clo
File: size12.clo 2000/05/19 v1.4b Standard LaTeX file (size option)
)
\c@part=\count79
\c@section=\count80
\c@subsection=\count81
\c@subsubsection=\count82
\c@paragraph=\count83
\c@subparagraph=\count84
\c@figure=\count85
\c@table=\count86
\abovecaptionskip=\skip41
\belowcaptionskip=\skip42
\bibindent=\dimen102
)
(/usr/share/texmf/tex/latex/amsmath/amsmath.sty
Package: amsmath 2000/07/18 v2.13 AMS math features
\@mathmargin=\skip43

For additional information on amsmath, use the `?' option.
(/usr/share/texmf/tex/latex/amsmath/amstext.sty
Package: amstext 2000/06/29 v2.01

(/usr/share/texmf/tex/latex/amsmath/amsgen.sty
File: amsgen.sty 1999/11/30 v2.0
\@emptytoks=\toks14
\ex@=\dimen103
))
(/usr/share/texmf/tex/latex/amsmath/amsbsy.sty
Package: amsbsy 1999/11/29 v1.2d
\pmbraise@=\dimen104
)
(/usr/share/texmf/tex/latex/amsmath/amsopn.sty
Package: amsopn 1999/12/14 v2.01 operator names
)
\inf@bad=\count87
LaTeX Info: Redefining \frac on input line 211.
\uproot@=\count88
\leftroot@=\count89
LaTeX Info: Redefining \overline on input line 307.
\classnum@=\count90
\DOTSCASE@=\count91
LaTeX Info: Redefining \ldots on input line 379.
LaTeX Info: Redefining \dots on input line 382.
LaTeX Info: Redefining \cdots on input line 467.
\Mathstrutbox@=\box26
\strutbox@=\box27
\big@size=\dimen105
LaTeX Font Info:    Redeclaring font encoding OML on input line 567.
LaTeX Font Info:    Redeclaring font encoding OMS on input line 568.
\macc@depth=\count92
\c@MaxMatrixCols=\count93
\dotsspace@=\muskip10
\c@parentequation=\count94
\dspbrk@lvl=\count95
\tag@help=\toks15
\row@=\count96
\column@=\count97
\maxfields@=\count98
\andhelp@=\toks16
\eqnshift@=\dimen106
\alignsep@=\dimen107
\tagshift@=\dimen108
\tagwidth@=\dimen109
\totwidth@=\dimen110
\lineht@=\dimen111
\@envbody=\toks17
\multlinegap=\skip44
\multlinetaggap=\skip45
\mathdisplay@stack=\toks18
LaTeX Info: Redefining \[ on input line 2666.
LaTeX Info: Redefining \] on input line 2667.
)
(/usr/share/texmf/tex/generic/pstricks/pstricks.sty
Package: pstricks 1997/03/25 package wrapper for PSTricks pstricks.tex

(/usr/share/texmf/tex/generic/pstricks/pstricks.tex
`PSTricks' v97 patch 10  <1999/03/24> (tvz)
\pst@dima=\dimen112
\pst@dimb=\dimen113
\pst@dimc=\dimen114
\pst@dimd=\dimen115
\pst@dimg=\dimen116
\pst@dimh=\dimen117
\pst@hbox=\box28
\pst@boxg=\box29
\pst@cnta=\count99
\pst@cntb=\count100
\pst@cntc=\count101
\pst@cntd=\count102
\pst@cntg=\count103
\pst@cnth=\count104
\pst@toks=\toks19
(/usr/share/texmf/tex/generic/pstricks/pstricks.con)
\psunit=\dimen118
\psxunit=\dimen119
\psyunit=\dimen120
\pslinewidth=\dimen121
\pst@customdefs=\toks20
\pslinearc=\dimen122
\everypsbox=\toks21
\psframesep=\dimen123
\pslabelsep=\dimen124
\theoverlaybox=\box30
))
(/usr/share/texmf/tex/latex/natbib/natbib.sty
Package: natbib 1999/05/28 7.0 (PWD)
\bibhang=\skip46
\bibsep=\skip47
LaTeX Info: Redefining \cite on input line 508.
\c@NAT@ctr=\count105
)
(/usr/share/texmf/tex/latex/hyperref/hyperref.sty
Package: hyperref 2000/11/05 v6.71a Hypertext links for LaTeX

(/usr/share/texmf/tex/latex/graphics/keyval.sty
Package: keyval 1999/03/16 v1.13 key=value parser (DPC)
\KV@toks@=\toks22
)
\@linkdim=\dimen125
\Hy@linkcounter=\count106
\Hy@pagecounter=\count107

(/usr/share/texmf/tex/latex/hyperref/pd1enc.def
File: pd1enc.def 2000/11/05 v6.71a Hyperref: PDFDocEncoding definition (HO)
)
Package hyperref Info: Bookmarks ON on input line 1661.
Package hyperref Info: Hyper figures OFF on input line 1680.
Package hyperref Info: Link nesting OFF on input line 1685.
Package hyperref Info: Hyper index ON on input line 1688.
Package hyperref Info: Plain pages ON on input line 1693.
Package hyperref Info: Backreferencing OFF on input line 1700.

Implicit mode ON; LaTeX internals redefined
(/usr/share/texmf/tex/latex/html/url.sty
Package: url 1999/03/02  ver 1.4  Verb mode for urls, email addresses, and file
 names
)
LaTeX Info: Redefining \url on input line 1905.
\Fld@menulength=\count108
\Field@Width=\dimen126
\Fld@charsize=\dimen127
\Choice@toks=\toks23
\Field@toks=\toks24
Package hyperref Info: Hyper figures OFF on input line 2351.
Package hyperref Info: Link nesting OFF on input line 2356.
Package hyperref Info: Hyper index ON on input line 2359.
Package hyperref Info: backreferencing OFF on input line 2366.
Package hyperref Info: Link coloring OFF on input line 2371.
\c@Item=\count109
\c@Hfootnote=\count110
)
*hyperref using default driver hpdftex*
(/usr/share/texmf/tex/latex/hyperref/hpdftex.def
File: hpdftex.def 2000/11/05 v6.71a Hyperref driver for pdfTeX

(/usr/share/texmf/tex/latex/psnfss/pifont.sty
Package: pifont 2000/01/12 PSNFSS-v8.1 Pi font support (SPQR) 
LaTeX Font Info:    Try loading font information for U+pzd on input line 62.

(/usr/share/texmf/tex/latex/psnfss/upzd.fd
File: upzd.fd 2000/01/12 PSNFSS-v8.1 font definitions for U/pzd.
)
LaTeX Font Info:    Try loading font information for U+psy on input line 63.

(/usr/share/texmf/tex/latex/psnfss/upsy.fd
File: upsy.fd 2000/01/12 PSNFSS-v8.1 font definitions for U/psy.
))
\Fld@listcount=\count111
\@outlinefile=\write3
)
(/home/sandrine/System/Programs/R-1.6.2/lib/R/share/texmf/Sweave.sty
(/usr/share/texmf/tex/latex/base/fontenc.sty
Package: fontenc 2000/08/30 v1.91 Standard LaTeX package

(/usr/share/texmf/tex/latex/base/t1enc.def
File: t1enc.def 2000/08/30 v1.91 Standard LaTeX file
LaTeX Font Info:    Redeclaring font encoding T1 on input line 38.
))
(/usr/share/texmf/tex/latex/graphics/graphicx.sty
Package: graphicx 1999/02/16 v1.0f Enhanced LaTeX Graphics (DPC,SPQR)

(/usr/share/texmf/tex/latex/graphics/graphics.sty
Package: graphics 1999/02/16 v1.0l Standard LaTeX Graphics (DPC,SPQR)

(/usr/share/texmf/tex/latex/graphics/trig.sty
Package: trig 1999/03/16 v1.09 sin cos tan (DPC)
)
(/usr/share/texmf/tex/latex/config/graphics.cfg)
Package graphics Info: Driver file: pdftex.def on input line 80.

(/usr/share/texmf/tex/latex/graphics/pdftex.def
File: pdftex.def 2001/11/29 v0.03i graphics/color for pdftex
\Gread@gobject=\count112
))
\Gin@req@height=\dimen128
\Gin@req@width=\dimen129
)
(/usr/share/texmf/tex/latex/ae/ae.sty
Package: ae 1998/11/17 1.0 Almost European Computer Modern

(/usr/share/texmf/tex/latex/base/fontenc.sty
Package: fontenc 2000/08/30 v1.91 Standard LaTeX package

(/usr/share/texmf/tex/latex/base/t1enc.def
File: t1enc.def 2000/08/30 v1.91 Standard LaTeX file
LaTeX Font Info:    Redeclaring font encoding T1 on input line 38.
)
LaTeX Font Info:    Try loading font information for T1+aer on input line 96.

(/usr/share/texmf/tex/latex/ae/t1aer.fd
File: t1aer.fd 1997/11/16 Font definitions for T1/aer.
)))
(/usr/share/texmf/tex/latex/fancyvrb/fancyvrb.sty
Package: fancyvrb 1998/07/17

Style option: `fancyvrb' v2.6, with DG/SPQR fixes <1998/07/17> (tvz)
\FV@CodeLineNo=\count113
\FV@InFile=\read1
\FV@TabBox=\box31
\c@FancyVerbLine=\count114
\FV@StepNumber=\count115
\FV@OutFile=\write4

No file fancyvrb.cfg.
)) (./lab3Marray.aux)
\openout1 = `lab3Marray.aux'.

LaTeX Font Info:    Checking defaults for OML/cmm/m/it on input line 35.
LaTeX Font Info:    ... okay on input line 35.
LaTeX Font Info:    Checking defaults for T1/cmr/m/n on input line 35.
LaTeX Font Info:    ... okay on input line 35.
LaTeX Font Info:    Checking defaults for OT1/cmr/m/n on input line 35.
LaTeX Font Info:    ... okay on input line 35.
LaTeX Font Info:    Checking defaults for OMS/cmsy/m/n on input line 35.
LaTeX Font Info:    ... okay on input line 35.
LaTeX Font Info:    Checking defaults for OMX/cmex/m/n on input line 35.
LaTeX Font Info:    ... okay on input line 35.
LaTeX Font Info:    Checking defaults for U/cmr/m/n on input line 35.
LaTeX Font Info:    ... okay on input line 35.
LaTeX Font Info:    Checking defaults for PD1/pdf/m/n on input line 35.
LaTeX Font Info:    ... okay on input line 35.
Package hyperref Info: Link coloring OFF on input line 35.
 (/usr/share/texmf/tex/latex/hyperref/nameref.sty
Package: nameref 2000/05/08 v2.18 Cross-referencing by name of section
\c@section@level=\count116
)
\openout3 = `lab3Marray.out'.

LaTeX Info: Redefining \ref on input line 35.
LaTeX Info: Redefining \pageref on input line 35.

(/usr/share/texmf/tex/context/base/supp-pdf.tex
(/usr/share/texmf/tex/context/base/supp-mis.tex
loading : Context Support Macros / Missing
\protectiondepth=\count117
\scratchcounter=\count118
\scratchtoks=\toks25
\scratchdimen=\dimen130
\scratchskip=\skip48
\scratchmuskip=\muskip11
\scratchbox=\box32
\scratchread=\read2
\scratchwrite=\write5
\zeropoint=\dimen131
\nextbox=\box33
\nextdepth=\dimen132
\everyline=\toks26
\!!counta=\count119
\!!countb=\count120
\recursecounter=\count121
)
loading : Context Support Macros / PDF
\nofMPsegments=\count122
\nofMParguments=\count123
\everyMPtoPDFconversion=\toks27
)
LaTeX Font Info:    Try loading font information for T1+aett on input line 37.
 (/usr/share/texmf/tex/latex/ae/t1aett.fd
File: t1aett.fd 1997/11/16 Font definitions for T1/aett.
)
Overfull \vbox (21.68121pt too high) has occurred while \output is active []


[1
Non-PDF special ignored!
Non-PDF special ignored!

{/usr/share/texmf/dvips/config/pdftex.map}]

LaTeX Font Warning: Font shape `T1/aett/bx/n' undefined
(Font)              using `T1/aett/m/n' instead on input line 97.


Overfull \vbox (21.68121pt too high) has occurred while \output is active []


[2]
Overfull \vbox (21.68121pt too high) has occurred while \output is active []


[3]
Overfull \vbox (21.68121pt too high) has occurred while \output is active []


[4]
Overfull \vbox (21.68121pt too high) has occurred while \output is active []


[5]
Overfull \vbox (21.68121pt too high) has occurred while \output is active []


[6] <lab3Marray-image1.pdf, id=48, 433.62pt x 433.62pt>
File: lab3Marray-image1.pdf Graphic file (type pdf)

<use lab3Marray-image1.pdf>
Overfull \vbox (21.68121pt too high) has occurred while \output is active []


[7 <./lab3Marray-image1.pdf>]
<lab3Marray-image2.pdf, id=64, 433.62pt x 433.62pt>
File: lab3Marray-image2.pdf Graphic file (type pdf)

<use lab3Marray-image2.pdf>
<lab3Marray-boxplot1.pdf, id=65, 433.62pt x 433.62pt>
File: lab3Marray-boxplot1.pdf Graphic file (type pdf)

<use lab3Marray-boxplot1.pdf>
Overfull \vbox (21.68121pt too high) has occurred while \output is active []


[8 <./lab3Marray-image2.pdf>]
<lab3Marray-boxplot2.pdf, id=78, 433.62pt x 433.62pt>
File: lab3Marray-boxplot2.pdf Graphic file (type pdf)

<use lab3Marray-boxplot2.pdf>
Overfull \vbox (21.68121pt too high) has occurred while \output is active []


[9 <./lab3Marray-boxplot1.pdf>]
<lab3Marray-boxplot3.pdf, id=91, 433.62pt x 433.62pt>
File: lab3Marray-boxplot3.pdf Graphic file (type pdf)

<use lab3Marray-boxplot3.pdf>
Overfull \vbox (21.68121pt too high) has occurred while \output is active []


[10 <./lab3Marray-boxplot2.pdf>]
<lab3Marray-boxplot4.pdf, id=104, 433.62pt x 433.62pt>
File: lab3Marray-boxplot4.pdf Graphic file (type pdf)

<use lab3Marray-boxplot4.pdf>
Overfull \vbox (21.68121pt too high) has occurred while \output is active []


[11 <./lab3Marray-boxplot3.pdf>]
<lab3Marray-boxplot5.pdf, id=118, 433.62pt x 433.62pt>
File: lab3Marray-boxplot5.pdf Graphic file (type pdf)

<use lab3Marray-boxplot5.pdf>
Overfull \vbox (21.68121pt too high) has occurred while \output is active []


[12 <./lab3Marray-boxplot4.pdf>]
Underfull \hbox (badness 10000) in paragraph at lines 429--432

 []


Overfull \vbox (21.68121pt too high) has occurred while \output is active []


[13 <./lab3Marray-boxplot5.pdf>]
Overfull \vbox (21.68121pt too high) has occurred while \output is active []


[14] (./lab3Marray.aux)

LaTeX Font Warning: Some font shapes were not available, defaults substituted.

 ) 
Here is how much of TeX's memory you used:
 4719 strings out of 50460
 59591 string characters out of 690584
 120547 words of memory out of 1500001
 7631 multiletter control sequences out of 10000+25000
 26728 words of font info for 66 fonts, out of 400000 for 1000
 14 hyphenation exceptions out of 10000
 35i,6n,36p,291b,366s stack positions out of 3000i,500n,3000p,50000b,5000s
</usr/share/texmf/fonts/type1/bluesky/cm/cmmi12.pfb></usr/share/texmf/fonts/t
ype1/bluesky/cm/cmbx12.pfb></usr/share/texmf/fonts/type1/bluesky/cm/cmsltt10.pf
b></usr/share/texmf/fonts/type1/bluesky/cm/cmr12.pfb></usr/share/texmf/fonts/ty
pe1/bluesky/cm/cmtt12.pfb></usr/share/texmf/fonts/type1/bluesky/cm/cmr17.pfb>
Output written on lab3Marray.pdf (14 pages, 1040227 bytes).
