###################################################
### chunk number 1: setup
###################################################
#line 18 "e:/packagebuilder/jobs/AdvancedR2011_20110307093955/AdvancedR2011/inst/doc/ForeignLanguage-lab.Rnw"
options(width = 40)


###################################################
### chunk number 2: wrapper eval=FALSE
###################################################
## #line 121 "e:/packagebuilder/jobs/AdvancedR2011_20110307093955/AdvancedR2011/inst/doc/ForeignLanguage-lab.Rnw"
## .cld <- function(data, width = 5)
## {
##     nsub <- nrow(data)
##     nsnp <- ncol(data)
##     if (width > nsnp)
##         stop("Width must be less than the number of snps.")
##     delta <- rep.int(0, (nsnp-width)*width)
##     res <- .C("composite_linkage_disequilibrium",
##               snp = as.raw(data),
##               n_sub = as.integer(nsub),
##               n_snp = as.integer(nsnp),
##               width = as.integer(width),
##               delta = as.double(delta), PACKAGE="StudentGWAS")
##     matrix(res$delta, nrow=(nsnp-width), ncol=width, byrow=TRUE,
##            dimnames = list(colnames(data)[1:(nsnp-width)], NULL))
## }


