Package: BiocVersion Version: 3.23.1 Maintainer: Bioconductor Package Maintainer MaintainerEmail: maintainer@bioconductor.org Package: BiocStyle Version: 2.40.0 Maintainer: Bioconductor Package Maintainer MaintainerEmail: maintainer@bioconductor.org Package: BiocGenerics Version: 0.58.0 Maintainer: Hervé Pagès MaintainerEmail: hpages.on.github@gmail.com Package: widgetTools Version: 1.90.0 Maintainer: Jianhua Zhang MaintainerEmail: jzhang@jimmy.harvard.edu Package: DynDoc Version: 1.90.0 Maintainer: Bioconductor Package Maintainer MaintainerEmail: maintainer@bioconductor.org Package: tkWidgets Version: 1.90.0 Maintainer: J. Zhang MaintainerEmail: jzhang@jimmy.harvard.edu Package: Biobase Version: 2.72.0 Maintainer: Bioconductor Package Maintainer MaintainerEmail: maintainer@bioconductor.org Package: BiocParallel Version: 1.46.0 Maintainer: Jiefei Wang MaintainerEmail: jiefei0804@gmail.com Package: S4Vectors Version: 0.50.0 Maintainer: Hervé Pagès MaintainerEmail: hpages.on.github@gmail.com Package: IRanges Version: 2.46.0 Maintainer: Hervé Pagès MaintainerEmail: hpages.on.github@gmail.com Package: Seqinfo Version: 1.2.0 Maintainer: Hervé Pagès MaintainerEmail: hpages.on.github@gmail.com Package: UCSC.utils Version: 1.8.0 Maintainer: Hervé Pagès MaintainerEmail: hpages.on.github@gmail.com Package: GenomeInfoDb Version: 1.48.0 Maintainer: Hervé Pagès MaintainerEmail: hpages.on.github@gmail.com Package: AnnotationDbi Version: 1.74.0 Maintainer: Bioconductor Package Maintainer MaintainerEmail: maintainer@bioconductor.org Package: AnnotationForge Version: 1.54.0 Maintainer: Bioconductor Package Maintainer MaintainerEmail: maintainer@bioconductor.org Package: OrganismDbi Version: 1.54.0 Maintainer: Bioconductor Package Maintainer MaintainerEmail: maintainer@bioconductor.org Package: XVector Version: 0.52.0 Maintainer: Hervé Pagès MaintainerEmail: hpages.on.github@gmail.com Package: GenomicRanges Version: 1.64.0 Maintainer: Hervé Pagès MaintainerEmail: hpages.on.github@gmail.com Package: KEGGgraph Version: 1.72.0 Maintainer: Jitao David Zhang MaintainerEmail: jitao_david.zhang@roche.com Package: SPIA Version: 2.64.0 Maintainer: Adi Laurentiu Tarca MaintainerEmail: atarca@med.wayne.edu Package: Biostrings Version: 2.80.0 Maintainer: Hervé Pagès MaintainerEmail: hpages.on.github@gmail.com Package: pwalign Version: 1.8.0 Maintainer: Hervé Pagès MaintainerEmail: hpages.on.github@gmail.com Package: MatrixGenerics Version: 1.24.0 Maintainer: Peter Hickey MaintainerEmail: peter.hickey@gmail.com Package: S4Arrays Version: 1.12.0 Maintainer: Hervé Pagès MaintainerEmail: hpages.on.github@gmail.com Package: SparseArray Version: 1.12.2 Maintainer: Hervé Pagès MaintainerEmail: hpages.on.github@gmail.com Package: DelayedArray Version: 0.38.1 Maintainer: Hervé Pagès MaintainerEmail: hpages.on.github@gmail.com Package: sparseMatrixStats Version: 1.24.0 Maintainer: Constantin Ahlmann-Eltze MaintainerEmail: artjom31415@googlemail.com Package: DelayedMatrixStats Version: 1.34.0 Maintainer: Peter Hickey MaintainerEmail: peter.hickey@gmail.com Package: annotate Version: 1.90.0 Maintainer: Bioconductor Package Maintainer MaintainerEmail: maintainer@bioconductor.org Package: genefilter Version: 1.94.0 Maintainer: Bioconductor Package Maintainer MaintainerEmail: maintainer@bioconductor.org Package: ROC Version: 1.88.0 Maintainer: Vince Carey MaintainerEmail: stvjc@channing.harvard.edu Package: SummarizedExperiment Version: 1.42.0 Maintainer: Hervé Pagès MaintainerEmail: hpages.on.github@gmail.com Package: SingleCellExperiment Version: 1.34.0 Maintainer: Davide Risso MaintainerEmail: risso.davide@gmail.com Package: Rhtslib Version: 3.8.0 Maintainer: Hervé Pagès MaintainerEmail: hpages.on.github@gmail.com Package: Rsamtools Version: 2.28.0 Maintainer: Bioconductor Package Maintainer MaintainerEmail: maintainer@bioconductor.org Package: cigarillo Version: 1.2.0 Maintainer: Hervé Pagès MaintainerEmail: hpages.on.github@gmail.com Package: GenomicAlignments Version: 1.48.0 Maintainer: Hervé Pagès MaintainerEmail: hpages.on.github@gmail.com Package: BiocIO Version: 1.22.0 Maintainer: Marcel Ramos MaintainerEmail: marcel.ramos@sph.cuny.edu Package: rtracklayer Version: 1.72.0 Maintainer: Michael Lawrence MaintainerEmail: lawremi@gmail.com Package: microRNA Version: 1.70.0 Maintainer: "Michael Lawrence" MaintainerEmail: lawremi@gmail.com Package: BSgenome Version: 1.80.0 Maintainer: Hervé Pagès MaintainerEmail: hpages.on.github@gmail.com Package: BiocFileCache Version: 3.2.0 Maintainer: Lori Shepherd MaintainerEmail: lori.shepherd@roswellpark.org Package: AnnotationHub Version: 4.2.0 Maintainer: Bioconductor Package Maintainer MaintainerEmail: maintainer@bioconductor.org Package: ExperimentHub Version: 3.2.0 Maintainer: Bioconductor Package Maintainer MaintainerEmail: maintainer@bioconductor.org Package: gdsfmt Version: 1.48.0 Maintainer: Xiuwen Zheng MaintainerEmail: zhengx@u.washington.edu Package: biomaRt Version: 2.68.0 Maintainer: Hugo Gruson MaintainerEmail: hugo.gruson@embl.de Package: GenomicFeatures Version: 1.64.0 Maintainer: H. Pagès MaintainerEmail: hpages.on.github@gmail.com Package: txdbmaker Version: 1.8.0 Maintainer: H. Pagès MaintainerEmail: hpages.on.github@gmail.com Package: ShortRead Version: 1.70.0 Maintainer: Bioconductor Package Maintainer MaintainerEmail: maintainer@bioconductor.org Package: VariantAnnotation Version: 1.58.0 Maintainer: Bioconductor Package Maintainer MaintainerEmail: maintainer@bioconductor.org Package: snpStats Version: 1.62.0 Maintainer: David Clayton MaintainerEmail: dc208@cam.ac.uk Package: preprocessCore Version: 1.74.0 Maintainer: Ben Bolstad MaintainerEmail: bmb@bmbolstad.com Package: affyio Version: 1.82.0 Maintainer: Ben Bolstad MaintainerEmail: bmb@bmbolstad.com Package: affy Version: 1.90.0 Maintainer: Robert D. Shear MaintainerEmail: rshear@ds.dfci.harvard.edu Package: multtest Version: 2.68.0 Maintainer: Katherine S. Pollard MaintainerEmail: katherine.pollard@gladstone.ucsf.edu Package: impute Version: 1.86.0 Maintainer: Balasubramanian Narasimhan MaintainerEmail: naras@stat.Stanford.EDU Package: Rhdf5lib Version: 2.0.0 Maintainer: Hugo Gruson MaintainerEmail: hugo.gruson@embl.de Package: rhdf5filters Version: 1.24.0 Maintainer: Hugo Gruson MaintainerEmail: hugo.gruson@embl.de Package: rhdf5 Version: 2.56.0 Maintainer: Hugo Gruson MaintainerEmail: hugo.gruson@embl.de Package: h5mread Version: 1.4.0 Maintainer: Hervé Pagès MaintainerEmail: hpages.on.github@gmail.com Package: HDF5Array Version: 1.40.0 Maintainer: Hervé Pagès MaintainerEmail: hpages.on.github@gmail.com Package: zellkonverter Version: 1.22.0 Maintainer: Luke Zappia MaintainerEmail: luke@lazappi.id.au Package: assorthead Version: 1.6.1 Maintainer: Aaron Lun MaintainerEmail: infinite.monkeys.with.keyboards@gmail.com Package: beachmat Version: 2.28.0 Maintainer: Aaron Lun MaintainerEmail: infinite.monkeys.with.keyboards@gmail.com Package: beachmat.hdf5 Version: 1.10.0 Maintainer: Aaron Lun MaintainerEmail: infinite.monkeys.with.keyboards@gmail.com Package: BiocNeighbors Version: 2.6.0 Maintainer: Aaron Lun MaintainerEmail: infinite.monkeys.with.keyboards@gmail.com Package: AnnotationFilter Version: 1.36.0 Maintainer: Bioconductor Package Maintainer MaintainerEmail: maintainer@bioconductor.org Package: limma Version: 3.68.2 Maintainer: Gordon Smyth MaintainerEmail: smyth@wehi.edu.au Package: vsn Version: 3.80.0 Maintainer: Wolfgang Huber MaintainerEmail: wolfgang.huber@embl.org Package: illuminaio Version: 0.54.0 Maintainer: Kasper Daniel Hansen MaintainerEmail: kasperdanielhansen@gmail.com Package: edgeR Version: 4.10.0 Maintainer: Yunshun Chen , Gordon Smyth MaintainerEmail: smyth@wehi.edu.au Package: Rsubread Version: 2.26.0 Maintainer: Wei Shi , Yang Liao and Gordon K Smyth MaintainerEmail: smyth@wehi.edu.au Package: geneplotter Version: 1.90.0 Maintainer: Bioconductor Package Maintainer MaintainerEmail: maintainer@bioconductor.org Package: glmGamPoi Version: 1.24.0 Maintainer: Constantin Ahlmann-Eltze MaintainerEmail: artjom31415@googlemail.com Package: DESeq2 Version: 1.52.0 Maintainer: Michael Love MaintainerEmail: michaelisaiahlove@gmail.com Package: eds Version: 1.14.0 Maintainer: Avi Srivastava MaintainerEmail: asrivastava@cs.stonybrook.edu Package: tximport Version: 1.40.0 Maintainer: Michael Love MaintainerEmail: michaelisaiahlove@gmail.com Package: tximeta Version: 1.30.0 Maintainer: Michael Love MaintainerEmail: michaelisaiahlove@gmail.com Package: apeglm Version: 1.34.0 Maintainer: Anqi Zhu MaintainerEmail: anqizhu@live.unc.edu Package: qvalue Version: 2.44.0 Maintainer: John D. Storey , Andrew J. Bass MaintainerEmail: ajbass@emory.edu Package: fishpond Version: 2.18.0 Maintainer: Michael Love MaintainerEmail: michaelisaiahlove@gmail.com Package: DEXSeq Version: 1.58.0 Maintainer: Hugo Gruson MaintainerEmail: hugo.gruson@embl.de Package: metapod Version: 1.20.0 Maintainer: Aaron Lun MaintainerEmail: infinite.monkeys.with.keyboards@gmail.com Package: csaw Version: 1.46.0 Maintainer: Aaron Lun MaintainerEmail: infinite.monkeys.with.keyboards@gmail.com Package: graph Version: 1.90.0 Maintainer: Bioconductor Package Maintainer MaintainerEmail: maintainer@bioconductor.org Package: Rgraphviz Version: 2.56.0 Maintainer: Kasper Daniel Hansen MaintainerEmail: kasperdanielhansen@gmail.com Package: RBGL Version: 1.88.0 Maintainer: Bioconductor Package Maintainer MaintainerEmail: maintainer@bioconductor.org Package: ProtGenerics Version: 1.44.0 Maintainer: Laurent Gatto MaintainerEmail: laurent.gatto@uclouvain.be Package: ensembldb Version: 2.36.0 Maintainer: Johannes Rainer MaintainerEmail: johannes.rainer@eurac.edu Package: biovizBase Version: 1.60.0 Maintainer: Michael Lawrence MaintainerEmail: lawremi@gmail.com Package: ggbio Version: 1.60.0 Maintainer: Michael Lawrence MaintainerEmail: lawremi@gmail.com Package: Gviz Version: 1.56.0 Maintainer: Robert Ivanek MaintainerEmail: robert.ivanek@unibas.ch Package: mzID Version: 1.50.0 Maintainer: Laurent Gatto MaintainerEmail: laurent.gatto@uclouvain.be Package: mzR Version: 2.46.0 Maintainer: Steffen Neumann MaintainerEmail: sneumann@ipb-halle.de Package: RProtoBufLib Version: 2.24.0 Maintainer: Mike Jiang MaintainerEmail: mike@ozette.ai Package: cytolib Version: 2.24.0 Maintainer: Mike Jiang MaintainerEmail: mike@ozette.com Package: flowCore Version: 2.24.0 Maintainer: Mike Jiang MaintainerEmail: mike@ozette.com Package: dir.expiry Version: 1.20.0 Maintainer: Aaron Lun MaintainerEmail: infinite.monkeys.with.keyboards@gmail.com Package: basilisk.utils Version: 1.24.0 Maintainer: Aaron Lun MaintainerEmail: infinite.monkeys.with.keyboards@gmail.com Package: basilisk Version: 1.24.0 Maintainer: Aaron Lun MaintainerEmail: infinite.monkeys.with.keyboards@gmail.com Package: rBiopaxParser Version: 2.52.0 Maintainer: Frank Kramer MaintainerEmail: frank.kramer@informatik.uni-augsburg.de Package: pcaMethods Version: 2.4.0 Maintainer: Henning Redestig MaintainerEmail: henning.red@gmail.com Package: MSnbase Version: 2.38.0 Maintainer: Laurent Gatto MaintainerEmail: laurent.gatto@uclouvain.be Package: rols Version: 3.8.0 Maintainer: Laurent Gatto MaintainerEmail: laurent.gatto@uclouvain.be PackageStatus: Deprecated Package: Rdisop Version: 1.72.0 Maintainer: Steffen Neumann MaintainerEmail: sneumann@ipb-halle.de Package: affxparser Version: 1.84.0 Maintainer: Kasper Daniel Hansen MaintainerEmail: kasperdanielhansen@gmail.com Package: MsCoreUtils Version: 1.24.0 Maintainer: RforMassSpectrometry Package Maintainer MaintainerEmail: maintainer@rformassspectrometry.org Package: biocViews Version: 1.80.0 Maintainer: Bioconductor Package Maintainer MaintainerEmail: maintainer@bioconductor.org Package: BiocBaseUtils Version: 1.14.0 Maintainer: Marcel Ramos MaintainerEmail: marcel.ramos@sph.cuny.edu Package: BiocCheck Version: 1.48.0 Maintainer: Marcel Ramos MaintainerEmail: marcel.ramos@sph.cuny.edu Package: KEGGREST Version: 1.52.0 Maintainer: Bioconductor Package Maintainer MaintainerEmail: maintainer@bioconductor.org Package: treeio Version: 1.36.1 Maintainer: Guangchuang Yu MaintainerEmail: guangchuangyu@gmail.com Package: ggtree Version: 4.2.0 Maintainer: Guangchuang Yu MaintainerEmail: guangchuangyu@gmail.com Package: ggtreeExtra Version: 1.22.0 Maintainer: Shuangbin Xu MaintainerEmail: xshuangbin@163.com Package: enrichplot Version: 1.32.0 Maintainer: Guangchuang Yu MaintainerEmail: guangchuangyu@gmail.com Package: clusterProfiler Version: 4.20.0 Maintainer: Guangchuang Yu MaintainerEmail: guangchuangyu@gmail.com Package: DOSE Version: 4.6.0 Maintainer: Guangchuang Yu MaintainerEmail: guangchuangyu@gmail.com Package: fgsea Version: 1.38.0 Maintainer: Alexey Sergushichev MaintainerEmail: alsergbox@gmail.com Package: GOSemSim Version: 2.38.0 Maintainer: Guangchuang Yu MaintainerEmail: guangchuangyu@gmail.com Package: ComplexHeatmap Version: 2.28.0 Maintainer: Zuguang Gu MaintainerEmail: guzuguang@suat-sz.edu.cn Package: EnrichedHeatmap Version: 1.42.0 Maintainer: Zuguang Gu MaintainerEmail: guzuguang@suat-sz.edu.cn Package: ResidualMatrix Version: 1.22.0 Maintainer: Aaron Lun MaintainerEmail: infinite.monkeys.with.keyboards@gmail.com Package: BiocSingular Version: 1.28.0 Maintainer: Aaron Lun MaintainerEmail: infinite.monkeys.with.keyboards@gmail.com Package: ScaledMatrix Version: 1.20.0 Maintainer: Aaron Lun MaintainerEmail: infinite.monkeys.with.keyboards@gmail.com Package: scuttle Version: 1.22.0 Maintainer: Aaron Lun MaintainerEmail: infinite.monkeys.with.keyboards@gmail.com Package: GEOquery Version: 2.80.0 Maintainer: Sean Davis MaintainerEmail: seandavi@gmail.com Package: gcrma Version: 2.84.0 Maintainer: Z. Wu MaintainerEmail: zwu@stat.brown.edu Package: affyPLM Version: 1.88.0 Maintainer: Ben Bolstad MaintainerEmail: bmb@bmbolstad.com Package: BSgenomeForge Version: 1.12.0 Maintainer: Hervé Pagès MaintainerEmail: hpages.on.github@gmail.com Package: alabaster.schemas Version: 1.12.0 Maintainer: Aaron Lun MaintainerEmail: infinite.monkeys.with.keyboards@gmail.com Package: alabaster.base Version: 1.12.0 Maintainer: Aaron Lun MaintainerEmail: infinite.monkeys.with.keyboards@gmail.com Package: alabaster.matrix Version: 1.12.0 Maintainer: Aaron Lun MaintainerEmail: infinite.monkeys.with.keyboards@gmail.com Package: alabaster.ranges Version: 1.12.0 Maintainer: Aaron Lun MaintainerEmail: infinite.monkeys.with.keyboards@gmail.com Package: alabaster.se Version: 1.12.0 Maintainer: Aaron Lun MaintainerEmail: infinite.monkeys.with.keyboards@gmail.com Package: alabaster.sce Version: 1.12.0 Maintainer: Aaron Lun MaintainerEmail: infinite.monkeys.with.keyboards@gmail.com Package: gypsum Version: 1.8.0 Maintainer: Aaron Lun MaintainerEmail: infinite.monkeys.with.keyboards@gmail.com Package: chihaya Version: 1.12.0 Maintainer: Aaron Lun MaintainerEmail: infinite.monkeys.with.keyboards@gmail.com Package: scran Version: 1.40.0 Maintainer: Aaron Lun MaintainerEmail: infinite.monkeys.with.keyboards@gmail.com Package: bluster Version: 1.22.0 Maintainer: Aaron Lun MaintainerEmail: infinite.monkeys.with.keyboards@gmail.com Package: scater Version: 1.40.0 Maintainer: Alan O'Callaghan MaintainerEmail: alan.ocallaghan@outlook.com Package: snifter Version: 1.22.0 Maintainer: Alan O'Callaghan MaintainerEmail: alan.ocallaghan@outlook.com Package: densvis Version: 1.22.0 Maintainer: Alan O'Callaghan MaintainerEmail: alan.ocallaghan@outlook.com Package: GSEABase Version: 1.74.0 Maintainer: Bioconductor Package Maintainer MaintainerEmail: maintainer@bioconductor.org Package: Category Version: 2.78.0 Maintainer: Bioconductor Package Maintainer MaintainerEmail: maintainer@bioconductor.org Package: GOstats Version: 2.78.0 Maintainer: Bioconductor Package Maintainer MaintainerEmail: maintainer@bioconductor.org Package: ReportingTools Version: 2.52.0 Maintainer: Jason A. Hackney , Gabriel Becker MaintainerEmail: becker.gabe@gene.com>, Jessica L. Larson , Mike Jiang MaintainerEmail: mike@ozette.ai Package: flowWorkspace Version: 4.24.0 Maintainer: Greg Finak , Mike Jiang MaintainerEmail: mike@ozette.com Package: ncdfFlow Version: 2.58.0 Maintainer: Mike Jiang MaintainerEmail: mike@ozette.com Package: flowViz Version: 1.76.0 Maintainer: Mike Jiang MaintainerEmail: mike@ozette.com Package: flowStats Version: 4.24.0 Maintainer: Greg Finak , Mike Jiang MaintainerEmail: mike@ozette.com Package: ggcyto Version: 1.40.0 Maintainer: Mike Jiang MaintainerEmail: mike@ozette.com Package: openCyto Version: 2.24.0 Maintainer: Mike Jiang MaintainerEmail: mike@ozette.com Package: CytoML Version: 2.24.0 Maintainer: Mike Jiang MaintainerEmail: mike@ozette.com Package: EBarrays Version: 2.76.0 Maintainer: Ming Yuan MaintainerEmail: myuan@isye.gatech.edu Package: pRoloc Version: 1.52.0 Maintainer: Lisa Breckels MaintainerEmail: lms79@cam.ac.uk Package: MLInterfaces Version: 1.92.0 Maintainer: Vincent Carey MaintainerEmail: stvjc@channing.harvard.edu Package: gpls Version: 1.84.0 Maintainer: Bioconductor Package Maintainer MaintainerEmail: maintainer@bioconductor.org Package: keggorthology Version: 2.64.0 Maintainer: VJ Carey MaintainerEmail: stvjc@channing.harvard.edu Package: hpar Version: 1.54.0 Maintainer: Laurent Gatto MaintainerEmail: laurent.gatto@uclouvain.be Package: LoomExperiment Version: 1.30.0 Maintainer: Bioconductor Package Maintainer MaintainerEmail: maintainer@bioconductor.org Package: sva Version: 3.60.0 Maintainer: Jeffrey T. Leek , John D. Storey MaintainerEmail: jstorey@princeton.edu>, W. Evan Johnson Damir Baranasic MaintainerEmail: damir.baranasic@lms.mrc.ac.uk Package: gwascat Version: 2.44.0 Maintainer: VJ Carey MaintainerEmail: stvjc@channing.harvard.edu Package: Rarr Version: 2.0.0 Maintainer: Hugo Gruson MaintainerEmail: hugo.gruson@embl.de Package: ZarrArray Version: 1.0.0 Maintainer: Hervé Pagès MaintainerEmail: hpages.on.github@gmail.com