\HeaderA{GOTERM}{Annotation of GO Identifiers to GO Terms}{GOTERM}
\keyword{datasets}{GOTERM}
\begin{Description}\relax
This data set gives mappings between GO ids and their respective terms.
\end{Description}
\begin{Details}\relax
Each GO id is mapped to a \code{GOTerms} object that has 6 slots:
\item[GOID] GO Identifier
\item[Term] The term for that GO id
\item[Synonym] Synonymous terms
\item[Secondary] Secondary terms that have been merged into this term
\item[Definition] Further definition of the GO term
\item[Ontology] One of MF - molecular function, BP - biological
process, or CC - cellular component

All the obsolete GO terms are under the nodes "obsolete molecular
function" (GO:0008369), "obsolete cellular component" (GO id
GO:0008370), and "obsolete biological process" (GO:0008371). Each of
these GO ids has a group of GO ids as their direct children with GO
terms that were defined by GO but are
deprecated in the current build. These deprecated GO terms were
appended by "(obsolete)" when the data package was built. 

Mappings were based on data provided by:

Gene Ontology:\url{http://gopher5/compbio/annotationSourceData/archive.godatabase.org/latest/}. Built: 200509

Package built: Fri Sep 30 02:51:32 2005
\end{Details}
\begin{References}\relax
\url{http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene}
\end{References}
\begin{Examples}
\begin{ExampleCode}
    require("GO") || stop("GO unavailable")
    require("annotate") || stop("annotate unavailable")
    # Convert the environment object to a list
    xx <- as.list(GOTERM)
    if(length(xx) > 0){
        # Get the TERMS for the first elent of xx
        GOID(xx[[1]])
        Term(xx[[1]])
        Synonym(xx[[1]])
        Secondary(xx[[1]])
        Definition(xx[[1]])
        Category(xx[[1]])
    }
\end{ExampleCode}
\end{Examples}

