\HeaderA{GOBPCHILDREN}{Annotation of GO Identifiers to their Biological Process Children}{GOBPCHILDREN}
\keyword{datasets}{GOBPCHILDREN}
\begin{Description}\relax
This data set describes associations between GO molecular function (BP)
terms and their direct children BP terms, based on the directed acyclic
graph (DAG) defined by the Gene Ontology Consortium. The format is an R
environment mapping the GO BP terms to all direct children terms, where a
direct child term is a more specific GO term that is immediately preceded
by the given GO term in the DAG.
\end{Description}
\begin{Details}\relax
Each GO BP term is mapped to a vector of children GO BP terms.

Biological process is defined as the broad biological goals, such as
mitosis or purine metabolism, that are accomplished by ordered
assemblies of molecular functions as defined by Gene Ontology
Consortium.

Mappings were based on data provided by:

Gene Ontology:\url{http://gopher5/compbio/annotationSourceData/archive.godatabase.org/latest/}. Built: 200509

Package built: Fri Sep 30 02:51:32 2005
\end{Details}
\begin{References}\relax
\url{http://www.geneontology.org/} and
\url{http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene}
\end{References}
\begin{Examples}
\begin{ExampleCode}
  require("GO", character.only = TRUE) || stop("GO unavailable")
  require("annotate", character.only = TRUE) || stop("annotate unavailable")
  # Convert the environment object to a list
  xx <- as.list(GOBPCHILDREN)
  # Remove GO ids that do not have any children
  xx <- xx[!is.na(xx)]
  if(length(xx) > 0){
     # Get the parent GO ids for the first elents of xx
        goids <- xx[[1]]
        # Find out the GO terms for the first parent goid
        GOID(GOTERM[[goids[1]]])
        Term(GOTERM[[goids[1]]])
        Synonym(GOTERM[[goids[1]]])
        Secondary(GOTERM[[goids[1]]])
        Definition(GOTERM[[goids[1]]])
        Category(GOTERM[[goids[1]]])
  }
\end{ExampleCode}
\end{Examples}

