rnohomologyLL2HGID        package:rnohomology        R Documentation

_M_a_p_p_i_n_g_s _b_e_t_w_e_e_n _p_u_b_l_i_c _d_a_t_a_b_a_s_e _i_d_s _a_n_d _N_C_B_I'_s _I_n_t_e_r_n_a_l
_H_o_m_o_l_o_G_e_n_e_I_D_s _f_o_r _R_a_t_t_u_s _n_o_r_v_e_g_i_c_u_s

_D_e_s_c_r_i_p_t_i_o_n:

     R environments that provides mappings between public database ids
     and internal HomoloGeneIDs (HGID) used by NCBI to represent
     sequences for Rattus norvegicus. Public database ids include
     LocusLink ids (LL) and GenBank Accesion/RefSeq numbers (ACC).

_D_e_t_a_i_l_s:

     Each R environment provides mapping between either HomoloGeneIds
     and database ids, or the converse. The mapping direction is
     indicated by the name of the environment. For instance,
     rnohomologyACC2HGID provides mappings between GenBank accession
     numbers and HomoloGeneIds.

     For each environment, a given id will map to a named vector of
     ids, the names of which are the NCBI code for that organism.

     Mappings contained were based on data provided by HomoloGene.

     HomoloGene:<URL: 
     ftp://ftp.ncbi.nih.gov/pub/HomoloGene/old/hmlg.ftp>. Built:
     HomoloGene built date not available

     Packagebuilt Tue Oct  4 20:04:40 2005

_R_e_f_e_r_e_n_c_e_s:

     <URL: http://www.ncbi.nih.gov/entrez/query.fcgi?db=homologene>

_E_x_a_m_p_l_e_s:

         require("annotate") || stop("annotate unavailable")
         xx <- as.list(rnohomologyLL2HGID)
             if(length(xx) > 5){
                     # Get the value of the first key
                     xx[2]
                     # Get the value for a few keys
                     if(length(xx) >= 3){
                             xx[2:4]
                     }
             }

