ratLLMappingsGO2LL       package:ratLLMappings       R Documentation

_A_n _a_n_n_o_t_a_t_i_o_n _d_a_t_a _t_h_a_t _m_a_p_s _G_e_n_e _O_n_t_o_l_o_g_y _i_d_e_n_t_i_f_i_e_r_s _t_o
_L_o_c_u_s_L_i_n_k _i_d_e_n_t_i_f_i_e_r_s

_D_e_s_c_r_i_p_t_i_o_n:

     ratLLMappingsGO2LL maps Gene Ontology (GO) ids to LocusLink ids
     for genes whose products have the functions corresponding to the
     GO ids

_D_e_t_a_i_l_s:

     This is an environment object containing key and value pairs. Keys
     are GO ids and values are LocusLink ids. Values are vectors of
     length 1 or more depending on whether a GO id can be mapped to one
     or more LocusLink ids. Names of values are evidence code that
     indicate the type of evidences that support associations between
     genes and GO functions. 

     The evidence codes in use include:

     IMP: inferred from mutant phenotype   IGI: inferred from genetic
     interaction IPI: inferred from physical interaction   ISS:
     inferred from sequence similarity  IDA: inferred from direct assay
       IEP: inferred from expression pattern   IEA: inferred from
     electronic annotation   TAS: traceable author statement   NAS:
     non-traceable author statement   ND: no biological data available 
      IC: inferred by curator

     Mappings were derived from data provided by:

     Entrez Gene: Not available

     Package built: Tue Oct  4 19:54:52 2005

_R_e_f_e_r_e_n_c_e_s:

     <URL: ftp://ftp.ncbi.nih.gov/refseq/LocusLink/LL_tmpl.gz>

_E_x_a_m_p_l_e_s:

             require("annotate") || stop("annotate unavailable")
             xx <- as.list(ratLLMappingsGO2LL)
             if(length(xx) > 0){
                     # Get the value of the first key
                     xx[[1]]
                     # Get the values  for a few keys
                     if(length(xx) >= 3){
                             xx[1:3]
                     }
             }

